Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0090
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74140.1 68414.m08587 hypothetical protein                          30   1.4  
At4g04635.1 68417.m00678 hypothetical protein                          30   1.9  
At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing ...    30   1.9  
At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing ...    30   1.9  
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    30   1.9  
At5g18750.1 68418.m02226 DNAJ heat shock N-terminal domain-conta...    29   2.5  
At1g01960.1 68414.m00114 guanine nucleotide exchange family prot...    29   2.5  
At3g55950.1 68416.m06217 protein kinase family protein contains ...    28   5.7  
At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related c...    28   7.6  
At1g73660.1 68414.m08530 protein kinase family protein contains ...    28   7.6  
At4g20460.1 68417.m02985 NAD-dependent epimerase/dehydratase fam...    27   10.0 
At1g69150.1 68414.m07911 DC1 domain-containing protein contains ...    27   10.0 

>At1g74140.1 68414.m08587 hypothetical protein
          Length = 277

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 440 PEQS-HLIRSRVSVPESVPEYLPRA 369
           P QS HL+ SR+S P SVP ++P A
Sbjct: 32  PNQSRHLLPSRLSSPSSVPHFVPSA 56


>At4g04635.1 68417.m00678 hypothetical protein
          Length = 284

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 272 HVEEG*TDLLAEDSVQSGRRERHTAQAGQLEDRPGEDTQERSLEH*LYSGSGDFALE 442
           H+EE   D   E+  + G  E    +  + E+  GE  +E   EH  Y   GD A+E
Sbjct: 213 HIEEYHVDDEEEEEEEEGEEEEGEGEEEEEEEEEGE--EEEGEEHVAYKPIGDRAME 267


>At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing
           protein
          Length = 354

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  WTLKASLNRSPTGG*RTTELRSCRP*TRTLVWRSDSTASAESTTRGPSSS 201
           WT   SL   P GG      RS      T+V  +D+T S  S T  PS S
Sbjct: 110 WTRGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYS 159


>At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing
           protein
          Length = 323

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  WTLKASLNRSPTGG*RTTELRSCRP*TRTLVWRSDSTASAESTTRGPSSS 201
           WT   SL   P GG      RS      T+V  +D+T S  S T  PS S
Sbjct: 110 WTRGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYS 159


>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 482 PLEAPPPPQDRSHQTEDVREQP 547
           P ++PPPPQ +  Q++  R QP
Sbjct: 130 PRQSPPPPQQQQSQSQQQRSQP 151


>At5g18750.1 68418.m02226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 884

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +3

Query: 375 GKILRNALWNTNSTPDQVTLLWKDPRNVGWREQTAYRWKLLHRPKIGLIRLKMYENNRLV 554
           GK     +W+ NS  D +   +   + + WR     +   L  PK  L  +  + + R+ 
Sbjct: 674 GKFAPGQIWSLNSKEDGLPKCYAKIQQIVWRPVFKLQINRL-EPKSLLENVIQWHDKRMP 732

Query: 555 ADSGNTYDFTLKGGR 599
              GN   FTLK GR
Sbjct: 733 VSCGN---FTLKEGR 744


>At1g01960.1 68414.m00114 guanine nucleotide exchange family protein
           similar to guanine nucleotide exchange factor [Homo
           sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
           domain
          Length = 1750

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 450 RNVGWREQTAYRWKLLHRPKIGLIRLKMYENNRLVAD--SGNTYDFTLKGGRLGVFCFSQ 623
           +N  WR+ +    KL H  K  + RL+  EN+  VAD  SG++    L  G    +  ++
Sbjct: 23  KNASWRKHS----KLAHECKSVIERLRSPENSSPVADSESGSSIPGPLHDGGAAEYSLAE 78

Query: 624 EMIIWSNLL 650
             II S L+
Sbjct: 79  SEIILSPLI 87


>At3g55950.1 68416.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           cytokinin-regulated kinase 1 [Nicotiana tabacum]
           gi|10998537|gb|AAG25966
          Length = 814

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +2

Query: 410 LYSGSGDFALERPSQRGLARADGLPLEAPPPPQDRSHQTEDVREQPPGRGL 562
           L SG+G      P Q   +     PL  PPPP   S  T     +   RGL
Sbjct: 345 LCSGTGSICKSCPIQFPASPPSQFPLPPPPPPPPPSPSTSSPPSKALTRGL 395


>At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related
           contains weak similarity to BR1 [Chironomus tentans]
           gi|7042|emb|CAA45607
          Length = 468

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 559 TLGTLTTSP*RGGDLECSASPRK*SYGLIYSTNVMIRFRRA*HREIST 702
           T G +T+ P   G L  S +PRK S  L YS ++        H +  T
Sbjct: 139 TTGLITSGPITSGPLNSSGAPRKISGPLDYSGSMKTHMPSVVHNQAVT 186


>At1g73660.1 68414.m08530 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 63  GESQQEPNWRVTDNGAEILQTLNSDPGLAVGFDSFG-GVDYEGTIFVNTKIDDDYV 227
           G      N+   D+G E +  L  DPG  +  D+ G  +DY+ + +  +  D+D +
Sbjct: 354 GSEDVAMNFIKADDGREYIVDLMGDPGTLIPADAAGLQIDYDESAYSASPGDNDSI 409


>At4g20460.1 68417.m02985 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-galactose 4-epimerase from
           Cyamopsis tetragonoloba GI:3021357 [EMBL:AJ005082],
           Bacillus subtilis SP|P55180; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 379

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 336 GIQLKLVNSKTGPGKILRNALWNTNSTPDQVTLLWK-DPRNVG 461
           G+Q+K  + KTG G  +R+ +  T+     V  L K  PRNVG
Sbjct: 254 GLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVG 296


>At1g69150.1 68414.m07911 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 567 NTYDFTLKGGRLGVFCFSQEMIIWSNLLYKCNDKIPASIASGDFNKEPF 713
           +TY+F + GGR    C      I+ +L+Y CN  +   +  G F    F
Sbjct: 33  HTYNFNIGGGR----CAGCGEKIYDSLIYICNKCVLVPLRKGRFGSSYF 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,650,814
Number of Sequences: 28952
Number of extensions: 406672
Number of successful extensions: 1278
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)