Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0089
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22840.1 68417.m03298 bile acid:sodium symporter family prote... 31 0.53
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 30 1.2
At2g29620.1 68415.m03598 expressed protein 29 3.8
At1g78170.1 68414.m09109 expressed protein 28 5.0
At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00... 28 5.0
At1g51290.1 68414.m05768 F-box family protein (FBX10) contains P... 28 5.0
At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr... 28 6.6
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr... 28 6.6
At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6) co... 28 6.6
>At4g22840.1 68417.m03298 bile acid:sodium symporter family protein
low similarity to SP|Q12908 Ileal sodium/bile acid
cotransporter {Homo sapiens}; contains Pfam profile
PF01758: Sodium Bile acid symporter family
Length = 409
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 333 EPLSEVLAAQTLERRFMSHSFKRMGLDLSGVNVLPIL*HREMLDVLKSISFNL--LTMVS 506
+P+S+V ++ L RR+ S +F MGLD G + ++ ++D +K + L + + S
Sbjct: 50 DPISQVGGSRNLWRRYASDNFSEMGLD-PGADPFKVIEKPSIVDRMKKANSILPHVVLAS 108
Query: 507 TTVAKV 524
T +A +
Sbjct: 109 TILALI 114
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 224 RSGIGWGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSC 87
R+G+ + A C V +GC C + + G + E N + VC C
Sbjct: 483 RNGLTFSA--CSDSVSTGCKCPEGFQGDGLTCEDINECKERSVCQC 526
>At2g29620.1 68415.m03598 expressed protein
Length = 747
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 541 EQQKEDTLATVVE-TIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNL 374
E+++ED VV T + LMD TS I R R+ + RSR L + +L
Sbjct: 214 EERREDVSKVVVAWTEDDQKNLMDLGTSEIERNKRLENLISRRRSRRFFLLAAEGSL 270
>At1g78170.1 68414.m09109 expressed protein
Length = 221
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 49 TTSCSQPHVLVWSQLQTPLCP-CRFV 123
TT C + H+LV TP+CP C+F+
Sbjct: 175 TTVCMKCHMLVMLCTSTPVCPNCKFM 200
>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
F-box domain
Length = 479
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 404 GPRSFWSKCFTHSVTPGNVRCIKVHKF 484
GPRS+W K T+ P ++ + V F
Sbjct: 383 GPRSYWKKNLTYKSLPKTLKVVVVRNF 409
>At1g51290.1 68414.m05768 F-box family protein (FBX10) contains Pfam
F-box domain PF:00646; similar to F-box protein family,
AtFBX9 (GP:20197985) {Arabidopsis thaliana}
Length = 377
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 415 RSRPILLKLCDMNLRSKVWAAKTSLKGSGITLSE 314
+ R LLKLC+ + K+W K S+ I L E
Sbjct: 241 KDRFSLLKLCNKTSKIKIWLTKNSINNREIGLVE 274
>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 563
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 201 DIVSK*CLIWMLLPRRLCRKMLLKRGHKPARTQRSLQLRPD---QNVWLRTRSSVRSRCH 31
D + + CL+ + L L ++ K+ A TQR LQ+R + Q WL ++++ C
Sbjct: 137 DDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDGCS 196
Query: 30 S 28
S
Sbjct: 197 S 197
>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 563
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 201 DIVSK*CLIWMLLPRRLCRKMLLKRGHKPARTQRSLQLRPD---QNVWLRTRSSVRSRCH 31
D + + CL+ + L L ++ K+ A TQR LQ+R + Q WL ++++ C
Sbjct: 137 DDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDGCS 196
Query: 30 S 28
S
Sbjct: 197 S 197
>At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6)
contains Pfam ACT domain PF01842; similar to uridylyl
transferase-like proteins GB:AAD20075, GB:AAC00631
[Arabidopsis thaliana]
Length = 433
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 266 LRSNQVLDSGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQG 108
+R QVLD + R+ S GW RS V G D+Y GT+R G
Sbjct: 82 IRDTQVLDYIQKRIESNAGWFIPPLRSSV--GVMPTDEYTS--IELAGTDRPG 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,315
Number of Sequences: 28952
Number of extensions: 319373
Number of successful extensions: 914
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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