Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0084
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53220.1 68418.m06616 expressed protein  ; expression support...    28   2.5  
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran...    27   3.3  
At3g29190.1 68416.m03661 terpene synthase/cyclase family protein...    27   3.3  
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / F...    27   4.4  
At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam...    27   4.4  
At5g54570.1 68418.m06793 glycosyl hydrolase family 1 protein con...    27   5.8  
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, pu...    27   5.8  
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ...    26   7.6  

>At5g53220.1 68418.m06616 expressed protein  ; expression supported
           by MPSS
          Length = 441

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 192 RRRGTYTVNADPDKRDTRIKNVLPVFYLKNIGKDGSKVTTVVATPGQGPDRPQEVS 359
           R+R     + D D  D   ++ +P+  LKN+     +++ +  TP +G    + +S
Sbjct: 168 RKRKRVIASDDDDDADDDDEDNIPISILKNLKPTNQEMSDLFDTPNKGESESRRLS 223


>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to SP|Q9P804
           N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
           2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 691

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 267 FYLKNIGKDGSKVTTVVATPGQGPDRPQEVSYADMK 374
           F+L+++G+   K  +V   PG GP  PQ+ ++   K
Sbjct: 419 FHLQSVGRSLPKNNSVRYLPGVGPVVPQDCTHCGKK 454


>At3g29190.1 68416.m03661 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 519

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 282 YFSDKIQEGHFLF*CPFYPDRHSLCKFPDVAASFILLFFRQSHITK 145
           YF D+I E HF     F   +HS  +   +A  FILL  +   + +
Sbjct: 232 YFRDRIVENHFFIQTLFVESQHSRARIM-MAKYFILLVIQDDTLDR 276


>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase /
           FK506-binding protein (ROF1) identical to rotamase FKBP
           (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen.
           Genet. 252 (5), 510-517 (1996))
          Length = 551

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 291 DGSKVTTVVATPGQGPDRPQEVSYADMKLIG 383
           D +KV   V   G G +RP E +   +KLIG
Sbjct: 269 DDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299


>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 777

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 278 FQIKYRKDIFYSSVPFIRIGIHCVSSPTSQHRLFYFFSDSHISQR 144
           F I YR   F+    FIR   HC+ +P  +  L  FF   H++ +
Sbjct: 514 FNIIYRSSRFF----FIRSLFHCICAPLYEVTLPDFFLGDHLTSQ 554


>At5g54570.1 68418.m06793 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966)  [Prunus serotina]
          Length = 535

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 157 TYHKEITSIFVVFTKTDWFIEEHHRFYNEL 68
           T+ KE     + F+  D  ++++HRF+N++
Sbjct: 66  TFTKEKPGKILDFSNADTTVDQYHRFHNDI 95


>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase,
           putative / FK506-binding protein, putative similar to
           rof1 [Arabidopsis thaliana] GI:1373396
          Length = 578

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 291 DGSKVTTVVATPGQGPDRPQEVSYADMKLIG 383
           D  KV   +   G+G +RP E +   +KLIG
Sbjct: 278 DDRKVIKKILKEGEGYERPNEGAIVKLKLIG 308


>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
           identical to WIP4 protein [Arabidopsis thaliana]
           gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 412

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 242 SVPFIRIG-IHCVSSPTSQHRLFYFFSDSHISQRNNIHIRC 123
           ++P + +  IH    PT+ H  +YF   +  S  +N   +C
Sbjct: 128 ALPLLSLSPIHKHQEPTANHHEYYFMETTETSSNSNFLDQC 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,255,510
Number of Sequences: 28952
Number of extensions: 165826
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)