Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0083
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   2.2  
At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containi...    28   2.9  
At2g43200.1 68415.m05369 dehydration-responsive family protein s...    27   5.0  
At5g60320.1 68418.m07560 lectin protein kinase family protein co...    26   8.7  
At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti...    26   8.7  

>At3g19670.1 68416.m02492 FF domain-containing protein / WW
            domain-containing protein weak similarity to
            huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
            GI:3341980; contains Pfam profiles PF01846: FF domain,
            PF00397: WW domain
          Length = 960

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 152  DRYAQHRGPLHHEE--AFRYYASVYVPHGVS---GGRDQHCRWRALVPSVREN 295
            DR  +     HH++  A +Y   +  PHG      GRD H R R    SV+EN
Sbjct: 849  DRVRERDSDDHHKKGAAGKYNHDMNEPHGKERRRSGRDSHNRHRERHTSVKEN 901


>At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 688

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
 Frame = +1

Query: 19  YLLKLKS*WI---RVCLIIILS*PFSRSPVSTLTSLR----------PLPTNYVKMS*SI 159
           +LL L S +I   R C +II    +SRSPVSTL  +           P  TNY ++   +
Sbjct: 113 FLLFLASGFIPDERTCNVIIARLLYSRSPVSTLGVIHRLIGFKKEFVPSLTNYNRLMNQL 172

Query: 160 CTTSRAL 180
           CT  R +
Sbjct: 173 CTIYRVI 179


>At2g43200.1 68415.m05369 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 611

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 194 LPHDVRALDVVHIDQLIFT*LVGNGLRLVSVETGLRENGH 75
           LP+  R+ D+VH  + +      +GL L+ V+  LR  G+
Sbjct: 271 LPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGY 310


>At5g60320.1 68418.m07560 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 675

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 189 RKRSATMLVCMFLMALVVAATSIAGGVLLYRQ 284
           ++   + L+ + LM LV+   ++ GG+ LYR+
Sbjct: 286 KQEQTSPLLIVLLMLLVLIMLAVLGGIYLYRR 317


>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 471

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 125 NGLRLVSVETGLRENGHDKIIIKHTLIHYDFNFNKYSVLQ 6
           +G  + + E G R  G  K  +KH L HY F  + + V Q
Sbjct: 312 HGCGVYTSEDGSRFVGEFKWGVKHGLGHYHFRMHGFGVYQ 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,864,401
Number of Sequences: 28952
Number of extensions: 171354
Number of successful extensions: 419
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)