Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0081
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 54 8e-08
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 50 1e-06
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 50 1e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 50 2e-06
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 48 5e-06
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 42 4e-04
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 42 5e-04
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 41 8e-04
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 37 0.010
At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to ... 32 0.39
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 31 0.89
At5g40470.1 68418.m04908 expressed protein 30 1.2
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con... 30 1.2
At2g19640.2 68415.m02295 SET domain-containing protein contains ... 29 2.1
At2g19640.1 68415.m02294 SET domain-containing protein contains ... 29 2.1
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 29 2.7
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 29 2.7
At1g30110.1 68414.m03680 diadenosine 5',5'''-P1,P4-tetraphosphat... 29 2.7
At4g30790.1 68417.m04362 expressed protein 28 4.8
At2g40095.1 68415.m04928 expressed protein 28 4.8
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 28 6.3
At5g54630.1 68418.m06802 zinc finger protein-related contains Pr... 27 8.3
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 27 8.3
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 54.0 bits (124), Expect = 8e-08
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Frame = +2
Query: 170 DLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT-SLKAKYPGLTVLL 346
D+D +L THL +A ++ ++Y++ N + A T +++ + P + LL
Sbjct: 22 DIDSSLF--THLFCTFADLEAESYEITIATWN------QAPFHAFTETVQQRNPHVKTLL 73
Query: 347 SVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFPRVKPK----- 511
S+GG + + + + + +R FI S + +A YGF G+DL W++PR + +
Sbjct: 74 SIGGG--NADKDAFASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYPRNEEEMYDFG 131
Query: 512 KIRSTWGSLWHGIKKTFGTT 571
K+ W S + GTT
Sbjct: 132 KLLEEWRSAVEAESNSSGTT 151
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/118 (27%), Positives = 58/118 (49%)
Frame = +2
Query: 143 ESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAK 322
E+Q + + P+ F THL +A + +++K+ + I T ++K +
Sbjct: 24 ETQDPITSAETIPSALF-THLFCAFADLDANSHKVFVSQAHEFIFSTFTE-----TVKIR 77
Query: 323 YPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFP 496
P + LLS+GG + + + Q+R FI+S + +A GF G+DLAW++P
Sbjct: 78 NPQVKTLLSIGGK--NANNSAFASMASNHQSRKTFIDSWIFIARSNGFHGLDLAWEYP 133
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/101 (29%), Positives = 50/101 (49%)
Frame = +2
Query: 197 THLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEE 376
THL +A + P T +V + ++ N+ I +K K P + LLS+GG +
Sbjct: 39 THLFCAFADLDPQTNSVVVSGAH---EQEFSNFTKI--VKKKNPHVQTLLSIGGR--NAD 91
Query: 377 PEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFPR 499
+ + + +R FI S + A Y FDG+DL W++P+
Sbjct: 92 KSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPK 132
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/105 (28%), Positives = 52/105 (49%)
Frame = +2
Query: 188 SFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGDAD 367
S THL +A I TY+++ + N T +++ + P + LLS+GGD
Sbjct: 45 SLFTHLFCAFADINTLTYQVIVSSRNKPKFSTFTQ-----TVRRRNPTVKTLLSIGGDFT 99
Query: 368 TEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFPRV 502
+ + + +R +FI+S + LA GF G+DL W++P +
Sbjct: 100 YNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYPSI 142
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/109 (27%), Positives = 53/109 (48%)
Frame = +2
Query: 170 DLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLS 349
D+D +L THL +A + T ++ + N T +++ + P + LLS
Sbjct: 43 DIDSSLF--THLFCAFADLNSQTNQVTVSSANQPKFSTFTQ-----TVQRRNPSVKTLLS 95
Query: 350 VGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFP 496
+GG + Y + + +R FI+S + +A YGF G+DL W++P
Sbjct: 96 IGGGI--ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP 142
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 41.9 bits (94), Expect = 4e-04
Identities = 32/125 (25%), Positives = 59/125 (47%)
Frame = +2
Query: 122 DSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRA 301
D +S E ++ P + F THL +A + T+++ N ++
Sbjct: 22 DGKSQSPECLSQGTPSSFIDSTLF-THLFCAFADVDSSTHEVTISAAN-----SYQFSSF 75
Query: 302 ITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDL 481
++K K + LLS+GG D ++ ++ S+ R FI+S + +A + F G+DL
Sbjct: 76 TETVKEKNTDVQTLLSIGGK-DADKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDL 133
Query: 482 AWQFP 496
AW++P
Sbjct: 134 AWEYP 138
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 41.5 bits (93), Expect = 5e-04
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +2
Query: 197 THLLYGYAGIQPDTYKL-VSLNENLDIDR-THDNYRAITSLKAKYPGLTVLLSVGGDADT 370
THL +A + T+++ +S + + TH ++K K + LLS+GG D
Sbjct: 38 THLFCAFADVDSSTHEVTISAANSCQVSSFTH-------TVKDKNTDVQTLLSIGGK-DA 89
Query: 371 EEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFP 496
++ ++ S+ R FI+S + +A + F G+DLAW++P
Sbjct: 90 DKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDLAWEYP 130
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 395 LLESQQARTVFINSGVLLAEQYGFDGIDLAWQFPR 499
+ S R FI S + +A YGFDG+DL W++PR
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 395 LLESQQARTVFINSGVLLAEQYGFDGIDLAWQFP 496
++ ++ +R FI+S + +A GF G+DLAW++P
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112
>At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to
epoxide hydrolase [Solanum tuberosum] GI:407944;
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 375
Score = 31.9 bits (69), Expect = 0.39
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +2
Query: 335 TVLLSVGGDADTEEPEK---YNLLLESQQ--ARTVFINSGVLLAEQYGFD-GIDLAWQFP 496
T+ + G DTE PEK Y LL + A V + G G D G +AWQ
Sbjct: 109 TIAPDLRGYGDTEAPEKVEDYTLLKRGRSVVALIVAVTGGDKAVSVVGHDWGAMIAWQLC 168
Query: 497 RVKPKKIRS 523
+ +P+K+++
Sbjct: 169 QYRPEKVKA 177
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -2
Query: 630 NSRTRAVKPSRCSDSFSSTGV--VPNVFLIPCQSDPQVERIFLGLTLGNCQARSIPSKPY 457
NS + +R + S S + V +++ + ++ PQ IF ++LGN Q +S PS+ Y
Sbjct: 113 NSFVSVISANRVNSSGSDEQIDEVISIYALT-EAGPQTSVIF-HVSLGNIQIQSFPSRAY 170
Query: 456 CSANST 439
S+N +
Sbjct: 171 FSSNKS 176
>At5g40470.1 68418.m04908 expressed protein
Length = 496
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 546 PCQSDPQVERIFLGLTLGNCQARSIPSKPYCSANSTPELMKTVRACCDSSRRLYFSGSSV 367
PC S + R G+T+G +RS + EL+ + +CC + R L F + V
Sbjct: 78 PCLSSLSIYR---GVTIGTTPSRSDEEHLKAETIFSDELISIISSCCFNLRNLCFLINPV 134
Query: 366 SAS 358
S+S
Sbjct: 135 SSS 137
>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:3820531) [Pinus
contorta]; similar to beta-glucosidase GI:804655 from
(Hordeum vulgare)
Length = 520
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +2
Query: 212 GYAGIQPDTYKLVSLNENLDIDRTHDN----YRAITSLKAKYPGLTVLLSVGGDADTEEP 379
GYA ++ D V++ E D++ H + ++ + LK +YP + + ++ G D ++P
Sbjct: 368 GYA-LKLDRKGNVTIGELTDVNWQHIDPTGFHKMLNYLKDRYPNMPMFITENGFGDLQKP 426
Query: 380 EKYNLLLESQQARTVFINSGVLLAEQYGF-DGIDLAWQF 493
E + L + R ++ SG L A Q DG ++ F
Sbjct: 427 ETTDKELLNDTKRIQYM-SGYLEALQAAMRDGANVKGYF 464
>At2g19640.2 68415.m02295 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 398
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 489 CQARSIPS--KPYCSANSTPELMKTVRACCDSSRRLYFSGSSVSASPPTD 346
CQ+ S+ S P C A+ TP L C+S RRL+ S SS + P+D
Sbjct: 75 CQSCSLVSFCSPNCFASHTPWL-------CESLRRLHQSSSSAFSDQPSD 117
>At2g19640.1 68415.m02294 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 341
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 489 CQARSIPS--KPYCSANSTPELMKTVRACCDSSRRLYFSGSSVSASPPTD 346
CQ+ S+ S P C A+ TP L C+S RRL+ S SS + P+D
Sbjct: 75 CQSCSLVSFCSPNCFASHTPWL-------CESLRRLHQSSSSAFSDQPSD 117
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 476 DLAWQFPRVKPKKIRS-TWGSLWHGIKKTFGTTPVDEKESE 595
+L ++ R+ K+ S WG W +KK+F T DE+ E
Sbjct: 546 ELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEETRE 586
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 203 LLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITS 310
LLYGY+G+ +KL L+ +RT ++ A+ S
Sbjct: 130 LLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLS 165
>At1g30110.1 68414.m03680 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase GI:1888557 from
[Lupinus angustifolius], [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 175
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +2
Query: 353 GGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWG 532
GG D E+P+ S R + +GV+ AE L + FP K+ WG
Sbjct: 40 GGIEDGEDPK-------SAAMRELQEETGVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWG 92
Query: 533 SLWHG 547
WHG
Sbjct: 93 GEWHG 97
>At4g30790.1 68417.m04362 expressed protein
Length = 1148
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 486 QARSIPSKPYCSANSTPELMKTVRACCD-SSRRLYFSGSSVSASPPTDNN 340
Q +PS+ SA+++PE KT C D SR L S S S S T +N
Sbjct: 1073 QIVKLPSQ--LSASASPEAGKTHHLCSDQGSRTLASSSISTSTSATTTSN 1120
>At2g40095.1 68415.m04928 expressed protein
Length = 209
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 491 FPRVKPKKIRSTWGSLWHGIKKTF 562
F + + K R W SLW GIK F
Sbjct: 3 FSKEEISKTRKLWSSLWRGIKTIF 26
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +2
Query: 269 DIDRTHDNY--RAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGV 442
D+ T ++Y + I AK G ++ VGG +TE ++ + +++ A + G+
Sbjct: 383 DLAETDNSYLSKKIAERIAKLTGGVAVIKVGGHTETELEDRKLRIEDAKNATFAAMREGI 442
Query: 443 LLAEQYGFDGIDLAWQFPRVKPKKIRSTWGSLWHGIKKTFGTTP 574
+ G I L + PR+K + ++ + I T P
Sbjct: 443 VPGG--GATYIHLLDEIPRIKKNLMEDSYEQIGADIVAMALTAP 484
>At5g54630.1 68418.m06802 zinc finger protein-related contains
Prosite:PS00028 Zinc finger, C2H2 type, domain
Length = 472
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 221 RHSRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCCGLPQVG 81
+H R + R G T ACGL I +S C + K C + + G
Sbjct: 320 KHPRCLADGNELLRFHGTTVACGLGINGSTSVCTAEKCCVCRIIRNG 366
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 317 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVL 445
AK G +L +GG ++TE EK + + ++ A + G++
Sbjct: 401 AKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIV 443
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,383
Number of Sequences: 28952
Number of extensions: 302196
Number of successful extensions: 967
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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