Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0078
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10540.1 68416.m01265 3-phosphoinositide-dependent protein ki...    60   2e-09
At5g04510.1 68418.m00451 3-phosphoinositide-dependent protein ki...    53   2e-07
At2g22050.1 68415.m02619 kelch repeat-containing F-box family pr...    29   3.2  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    28   5.6  
At1g17250.1 68414.m02101 leucine-rich repeat family protein cont...    28   7.4  

>At3g10540.1 68416.m01265 3-phosphoinositide-dependent protein
           kinase, putative similar to 3-phosphoinositide-dependent
           protein kinase-1 [Oryza sativa] gi|5001830|gb|AAD37166
          Length = 486

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
 Frame = +3

Query: 3   ELILKQGLVDKRKGLFPRRRMLLLTTGPRLFYVDPANMILKGEIPWSP---ELRVEAKNF 173
           E +L    V K + +  ++  L+LT  PRL YVDP+ +++KG I WS    +L V+  + 
Sbjct: 393 ESVLMISAVKKLQKITSKKVQLILTNKPRLIYVDPSKLVVKGNIIWSDNSNDLNVQVSSP 452

Query: 174 RIFLVHTPNRTYYLEDPDSYALEWERVIDEVR 269
             F + TP +    ED    AL+W++ I+ ++
Sbjct: 453 SHFKICTPKKVLSFEDAKQRALQWKKAIETLQ 484


>At5g04510.1 68418.m00451 3-phosphoinositide-dependent protein
           kinase, putative similar to 3-phosphoinositide-dependent
           protein kinase-1 [Oryza sativa] gi|5001830|gb|AAD37166
          Length = 491

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
 Frame = +3

Query: 3   ELILKQGLVDKRKGLFPRRRMLLLTTGPRLFYVDPANMILKGEIPWSP---ELRVEAKNF 173
           E +L    V K + +  ++  L+LT  P+L YVDP+ +++KG I WS    +L V   + 
Sbjct: 398 ESVLMISAVKKLQKITSKKVQLILTNKPKLIYVDPSKLVVKGNIIWSDNSNDLNVVVTSP 457

Query: 174 RIFLVHTPNRTYYLEDPDSYALEWERVIDEVR 269
             F + TP +    ED    A  W++ I+ ++
Sbjct: 458 SHFKICTPKKVLSFEDAKQRASVWKKAIETLQ 489


>At2g22050.1 68415.m02619 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 349

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 674 KIVGISLLNVNRNQSINIHSDSSLEHVVASLNRIRCTKR-AARASHLALW 528
           K+VG+  LNV  + S+    D  L  + + +++ +  K  A R+S L LW
Sbjct: 298 KVVGLKTLNVKFDVSVMAEYDGKLAILWSEIDQTKMEKGFAGRSSGLVLW 347


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 463 RPPDRSIRCTARREPRAAP 519
           +PP R+IR  A++ P+AAP
Sbjct: 306 KPPSRTIRANAKKLPKAAP 324


>At1g17250.1 68414.m02101 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 756

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 72  LTTGPRLFYVDPANMILKGEIP 137
           L T P LFY+D +  +L GE+P
Sbjct: 519 LGTFPHLFYIDLSENLLSGELP 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,339
Number of Sequences: 28952
Number of extensions: 331869
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)