Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0077
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    74   7e-14
At1g02810.1 68414.m00239 pectinesterase family protein contains ...    29   3.3  
At2g04305.1 68415.m00423 magnesium transporter CorA-like protein...    28   4.4  
At4g34070.1 68417.m04834 expressed protein                             27   7.7  
At2g45380.1 68415.m05645 expressed protein similar to gi2344899|...    27   7.7  
At1g09730.1 68414.m01092 Ulp1 protease family protein low simila...    27   7.7  

>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
 Frame = +2

Query: 95  ETRLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQA 274
           E RL K   P  Y L L P L    + GTV I L  + ++  + L+   +L ++   V  
Sbjct: 7   EPRLPKFAVPKRYDLRLNPDLIACTFTGTVAIDLDIVADTRFIVLNAA-DLSVNDASVSF 65

Query: 275 YPASDAEH-PVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGF 451
            P S ++     +VV+ E     +  IL L F + +P G  G ++L + G ++  + +GF
Sbjct: 66  TPPSSSKALAAPKVVLFE-----EDEILVLEFGEILPHGV-GVLKLGFNGVLNDKM-KGF 118

Query: 452 FKSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGYKTPFEISVARPRE 601
           ++STY  + GE+  +A TQ  P +ARR FPC+DEP  K  F+I++  P +
Sbjct: 119 YRSTYEHN-GEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLEVPTD 167


>At1g02810.1 68414.m00239 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 579

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +3

Query: 426 FTWVSPRDSSNLRTRQIRVKRLW*QPHSFVQTTRGVCSPASTSRDTRPRSKSA*HDPGNM 605
           F W  PR  S+  T+  R+ R    P    + T+ V    S  R       +   D G+M
Sbjct: 200 FAWAQPRSGSSTHTKPFRLFRNGALPLKMTEKTKAVYESLS-RRKLADGDSNGDGDDGSM 258

Query: 606 VALSN 620
           V +S+
Sbjct: 259 VLISD 263


>At2g04305.1 68415.m00423 magnesium transporter CorA-like
           protein-related
          Length = 434

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 283 CWIRLYIPKANAKLMVTMQAELIGLLQPLQL 191
           CW  + +PK N KL  + Q  +  L  PL+L
Sbjct: 68  CWYHVELPKGNQKLSQSAQHLIDALCPPLKL 98


>At4g34070.1 68417.m04834 expressed protein
          Length = 363

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 439 DTHVNIASIRQLYMTFGSLGDRLFEIQSQYRLFDVHT 329
           D +V+    ++ +   GSLG+R+F++ +Q+R  D  T
Sbjct: 139 DQYVSYPVFQEYFGLSGSLGERIFDMVTQHRKDDKMT 175


>At2g45380.1 68415.m05645 expressed protein similar to
           gi2344899|AC002388
          Length = 491

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 439 DTHVNIASIRQLYMTFGSLGDRLFEIQSQYRLFDVHT 329
           D +V+    ++ +   GSLG+R+F++ +Q+R  D  T
Sbjct: 139 DQYVSYPVFQEYFGLSGSLGERIFDMVTQHRKDDKMT 175


>At1g09730.1 68414.m01092 Ulp1 protease family protein low
           similarity to SP|Q9GZR1 SUMO-1-specific protease 1 (EC
           3.4.22.-) (Sentrin-specific protease SENP6) (Protease
           FKSG6) {Homo sapiens}; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 984

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 452 FKSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEP 556
           + + + TD  +++ V+   L  N  +R FP FDEP
Sbjct: 401 YPAVWNTDLEDDVEVSGYNL--NQQKRYFPSFDEP 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,758,726
Number of Sequences: 28952
Number of extensions: 318123
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)