Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794...    30   0.91 
At5g18880.1 68418.m02243 expressed protein ; expression supporte...    28   2.8  
At3g24520.1 68416.m03079 heat shock transcription factor family ...    28   2.8  
At2g19630.1 68415.m02293 F-box family protein contains F-box dom...    28   2.8  
At1g20060.1 68414.m02511 kinesin motor protein-related                 28   2.8  
At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP...    27   4.8  
At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP...    27   4.8  
At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containi...    27   6.4  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    27   8.5  
At4g13000.1 68417.m02029 protein kinase family protein contains ...    27   8.5  
At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containi...    27   8.5  
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic...    27   8.5  

>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
           Domain of Unknown function
          Length = 350

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 343 LPTLAKYLDQLKSFGPXSSGICPFGLVAFIFKYKSSESMAK 221
           LP +    + +KS G   SGIC   L +   ++KS + M K
Sbjct: 229 LPMMNGIKEDIKSIGVLDSGICSEALFSLASRFKSLQMMCK 269


>At5g18880.1 68418.m02243 expressed protein ; expression supported
           by MPSS
          Length = 295

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 412 KLPTFPEGLIKFSMITWSRLLTGLPTLAKYLDQLKSFG---PXSSGICPFG 269
           K+  F E + +FS+ITW   L  LPT     D+L+ +G   P S  +C  G
Sbjct: 129 KVVWFKEYIPRFSLITWMSFLERLPT----RDRLRGWGMNIPSSWVLCSNG 175


>At3g24520.1 68416.m03079 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 330

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 229 MAKCFSSNKWSMVASAV-SMFCLPEPAVKSGCGGCDVMTGK 110
           +AK   SN  S  +S++ S F LPE     G GGC  + G+
Sbjct: 258 VAKSMLSNSTSSTSSSLTSTFSLPESVNGGGGGGCGSIQGE 298


>At2g19630.1 68415.m02293 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 297

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 66  AKPQLRASKK*TRNSFPVITSQPPHPDLTAGSGKQNIETAEATILH 203
           + PQL+      + S PV+ +   H  LT GSG  +  T +  I H
Sbjct: 81  SSPQLQNPDDDHKKSSPVVVNYHMHHILTLGSGNMSWRTIQCCIPH 126


>At1g20060.1 68414.m02511 kinesin motor protein-related
          Length = 951

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 252 KMKATSPNGQIPEXWGPKDLSWSKYLASVGKPVNNRDHVIIENFIK 389
           K+K ++P     +   P D S S  L  V +  N R+H+I+ NF K
Sbjct: 485 KIKLSAPKTSQGKKADPTDRS-SPRLEHVAQDKNEREHIIMRNFSK 529


>At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP1)
           identical to biotin carboxyl carrier protein of
           acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
           gi|9759121|dbj|BAB09606
          Length = 254

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 66  AKPQLRASKK*TRNSFPVITSQPPHPDLTAGSGKQNIE 179
           AKP+LR   K +R+S+PV+ +Q       A S    ++
Sbjct: 42  AKPKLRFLSKPSRSSYPVVKAQSNKVSTGASSNAAKVD 79


>At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP1)
           identical to biotin carboxyl carrier protein of
           acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
           gi|9759121|dbj|BAB09606
          Length = 280

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 66  AKPQLRASKK*TRNSFPVITSQPPHPDLTAGSGKQNIE 179
           AKP+LR   K +R+S+PV+ +Q       A S    ++
Sbjct: 42  AKPKLRFLSKPSRSSYPVVKAQSNKVSTGASSNAAKVD 79


>At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containing
           protein strong similarity to PCMP-H2 [Arabidopsis
           thaliana] GI:5050911; contains Pfam profile PF01535: PPR
           repeat
          Length = 783

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 394 EGLIKFSMITWSRLLTGLPTLAKYLDQLKSF-GPXSSGICPFGLV 263
           EG+I+  +I+W+ L+TG      Y + LK F      GI P  +V
Sbjct: 388 EGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIV 432


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 220 CFSSNKWSMVASAVSMFCLPE-PAVKSGCGGCDVMTGKEF 104
           C   N+      + +   +PE P  K+ CG C ++TG  +
Sbjct: 381 CLEKNEAKKSKPSTTEVTVPESPEAKTTCGSCIILTGGRY 420


>At4g13000.1 68417.m02029 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 372

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 339 PRWPNTWTSSSPLVPXLQEFARSGSSLSFLSTNRLRAWLSVSRLISGVWSLRRSLCFVCL 160
           PR P +  SSSP +    +  RS  + S L  + +    SVSR     +S  +S  FV  
Sbjct: 173 PRTPQSSFSSSPRLSTATKKERSIFAFSGLCNSGISPDDSVSRSSESEFSGEKSNSFVGT 232

Query: 159 SRQLSPDAV 133
              ++P+ +
Sbjct: 233 EEYVAPEVI 241


>At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 601

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 201 HLLDEKHLAMLSDDLYLKMKATSPNGQIPEXWGPKDL-SWSKYLASVGKPVNNRDHVIIE 377
           H+LD      L D +Y K  A S + +I E  G KDL  W+  ++  G  ++     ++ 
Sbjct: 348 HVLDRVTATALMD-MYSKCGALSSSREIFEHVGRKDLVCWNTMISCYG--IHGNGQEVVS 404

Query: 378 NFIK 389
            F+K
Sbjct: 405 LFLK 408


>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
           to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
           gi|20530143|gb|AAM27004
          Length = 501

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 274 FGLVAFIFKYKSSESMAKCFSSNKWSMVASAVS 176
           FG V  + K+K+ E   KC ++ K+ + A  +S
Sbjct: 401 FGPVMSLMKFKTVEEGIKCANNTKYGLAAGILS 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,710,115
Number of Sequences: 28952
Number of extensions: 215732
Number of successful extensions: 772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)