Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0070
(577 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12400.1 68414.m01433 expressed protein 61 6e-10
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 29 2.2
At5g59910.1 68418.m07513 histone H2B nearly identical to histone... 28 3.9
At3g46030.1 68416.m04980 histone H2B, putative strong similarity... 28 3.9
At3g45980.1 68416.m04975 histone H2B identical to histone H2B Ar... 28 3.9
At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid sy... 28 3.9
At3g04490.1 68416.m00476 exportin-related weak similarity to Exp... 28 3.9
At2g37470.1 68415.m04596 histone H2B, putative strong similarity... 27 6.8
At1g17250.1 68414.m02101 leucine-rich repeat family protein cont... 27 9.0
>At1g12400.1 68414.m01433 expressed protein
Length = 71
Score = 60.9 bits (141), Expect = 6e-10
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = +2
Query: 74 MVNVMKGVLVECDPAMKQFLLHLDETLALGRKFILQDLDETHLFISADIVETLQARVDDL 253
MVN +KGV V CD M QF+++++ ++ +KFI+ LD THLF+ + + +++ + D
Sbjct: 1 MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 254 MDQLS 268
DQ S
Sbjct: 61 RDQNS 65
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = -2
Query: 285 LSCTGMLSWSIKSSTRACRVSTISADMN-KCVSSRS*RI----NFLPSARVSSKCSKNC 124
LSC WS KS C S I MN C+++ + N +PS R+ CS+ C
Sbjct: 331 LSCIPTSLWSCKSQNVYCESSQIGQQMNLTCITNGKTEMYKLSNDIPS-RIQQLCSQLC 388
>At5g59910.1 68418.m07513 histone H2B nearly identical to histone
H2B Arabidopsis thaliana GI:2407802; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 467 KKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQL 574
KK+PK A + +K K KS E YK+ K Q+
Sbjct: 39 KKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQV 74
>At3g46030.1 68416.m04980 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 467 KKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQL 574
KK+PK A + +K K KS E YK+ K Q+
Sbjct: 34 KKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQV 69
>At3g45980.1 68416.m04975 histone H2B identical to histone H2B
Arabidopsis thaliana GI:2407802; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 467 KKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQL 574
KK+PK A + +K K KS E YK+ K Q+
Sbjct: 39 KKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQV 74
>At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid
synthase family protein similar to cyclopropane synthase
[Sterculia foetida] GI:21069167; contains Pfam profile
PF02353: Cyclopropane-fatty-acyl-phospholipid synthase
Length = 406
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 23 LFTINYYIK*QVLKQ*TMVNVMKGVLVECDPAMKQFLLHLDETL 154
L ++ YY+K VLKQ T+ K + D + + F L +D+T+
Sbjct: 90 LASVKYYLK-HVLKQNTLTQARKNISSHYDLSNEFFGLFMDDTM 132
>At3g04490.1 68416.m00476 exportin-related weak similarity to
Exportin 4 (Exp4) (Swiss-Prot:Q9ESJ0) [Mus musculus] and
(Swiss-Prot:Q9C0E2) [Homo sapiens]
Length = 921
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 194 FHPGLEE*TFYQVQEFHPSVVRIVSLP 114
F P +E FYQV EF PS + LP
Sbjct: 138 FTPAQKEVFFYQVSEFSPSTSSAMGLP 164
>At2g37470.1 68415.m04596 histone H2B, putative strong similarity to
histone H2B from Lycopersicon esculentum GI:3021483,
GI:3021485, Capsicum annuum SP|O49118; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 467 KKVPKFADSNEKPTRKKKSKSAEYYKMRFRKTFAQL 574
KK+ K A +EK +KK KS E YK+ K Q+
Sbjct: 29 KKISKDAGGSEKK-KKKSKKSVETYKIYIFKVLKQV 63
>At1g17250.1 68414.m02101 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 756
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 291 NPLSCTGMLSWSIKSSTRACRVSTISAD 208
NPL C G+L S K+ST+ +T AD
Sbjct: 690 NPLLCGGILLTSCKASTKLPATTTNKAD 717
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,385
Number of Sequences: 28952
Number of extensions: 240527
Number of successful extensions: 606
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -