Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0069
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24670.1 68415.m02946 hypothetical protein contains Pfam prof...    28   2.0  
At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin fa...    26   8.2  

>At2g24670.1 68415.m02946 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 251

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +3

Query: 111 NVNNRITKPST---TKIHIHENSLRAR*T*RAR 200
           N ++ IT PST   +K HIH++SLR   T R+R
Sbjct: 42  NKSSTITTPSTVMESKSHIHDHSLRESPTRRSR 74


>At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245, SP|Q03211 Pistil-specific
           extensin-like protein precursor (PELP) {Nicotiana
           tabacum}; contains Pfam profile PF01190: Pollen proteins
           Ole e I family
          Length = 239

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 83  VVDIK*RLIQRQQQNN--ETKYDKNSYTRKLATRTL 184
           V D   RL+ + ++N+  ETK DKN Y   LA +T+
Sbjct: 135 VKDAVVRLVCKNKKNSISETKTDKNGYFMLLAPKTV 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,327,982
Number of Sequences: 28952
Number of extensions: 71229
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)