Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0057
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,... 116 2e-26
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,... 116 2e-26
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,... 110 8e-25
At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,... 110 1e-24
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 88 5e-18
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 88 5e-18
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,... 83 2e-16
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 81 9e-16
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,... 54 7e-08
At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,... 52 3e-07
At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,... 48 5e-06
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 48 6e-06
At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,... 46 2e-05
At3g16060.1 68416.m02030 kinesin motor family protein similar to... 30 1.8
At3g27860.1 68416.m03474 PWWP domain-containing protein 29 4.0
At3g49280.1 68416.m05386 hypothetical protein 28 5.3
At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1)... 28 5.3
>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 116 bits (278), Expect = 2e-26
Identities = 51/93 (54%), Positives = 67/93 (72%), Gaps = 4/93 (4%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
I++VWN NL EE +IR VV + +VAMDTEFPG+V RP+G F+S ADY Y+ L+ NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 527 LRIIQLGLTFMDENGKTP----PGYTTWQFNFK 613
L++IQLGLTF +E G P Y WQFNF+
Sbjct: 72 LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFR 104
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
F+L D++A DSI+LL+ SG+ K+ DGI+
Sbjct: 106 FDLDSDIFALDSIELLKQSGIDLAKNTLDGID 137
>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 116 bits (278), Expect = 2e-26
Identities = 51/93 (54%), Positives = 67/93 (72%), Gaps = 4/93 (4%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
I++VWN NL EE +IR VV + +VAMDTEFPG+V RP+G F+S ADY Y+ L+ NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 527 LRIIQLGLTFMDENGKTP----PGYTTWQFNFK 613
L++IQLGLTF +E G P Y WQFNF+
Sbjct: 72 LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFR 104
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
F+L D++A DSI+LL+ SG+ K+ DGI+
Sbjct: 106 FDLDSDIFALDSIELLKQSGIDLAKNTLDGID 137
>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 275
Score = 110 bits (265), Expect = 8e-25
Identities = 48/94 (51%), Positives = 66/94 (70%), Gaps = 5/94 (5%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
I++VWN NL E +IR+VV + +VAMDTEFPG+V RP+G F++ +Y Y+ L+ NV++
Sbjct: 12 IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNI 71
Query: 527 LRIIQLGLTFMDENGKTPP-----GYTTWQFNFK 613
L++IQLGLTF DE G P Y WQFNF+
Sbjct: 72 LKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFR 105
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
F+L+ D+YA DSI+LL+ SG+ F K+ E GI+
Sbjct: 107 FDLESDIYATDSIELLRQSGIDFVKNNEFGID 138
>At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 277
Score = 110 bits (264), Expect = 1e-24
Identities = 48/93 (51%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 526
I++VW++NL EEF +IR++V K+ ++AMDTEFPGVV +P+ F+ D Y+ L+ NVDL
Sbjct: 12 IREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDL 71
Query: 527 LRIIQLGLTFMDENGKTP----PGYTTWQFNFK 613
L++IQ+GLTF DENG P + WQFNF+
Sbjct: 72 LKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFR 104
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
FN+ ED+YA +SI+LL+ G+ F+K+ E GI+
Sbjct: 106 FNIGEDIYASESIELLRQCGIDFKKNIEKGID 137
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 88.2 bits (209), Expect = 5e-18
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 10/99 (10%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI------GEFRSTADYQYQLL 508
I++VWNHNL +E +I Q + + +VAMDTEFPG+V + + + +Y Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 509 RCNVDLLRIIQLGLTFMDENGKTPPGYTT----WQFNFK 613
+ NV++L++IQLGLT DE G P T WQFNF+
Sbjct: 76 KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFR 114
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
FN+ DM+A DSI+LL+ S + K+ E G++
Sbjct: 116 FNVISDMFALDSIELLRKSAIDLEKNNECGVD 147
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 88.2 bits (209), Expect = 5e-18
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 10/99 (10%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI------GEFRSTADYQYQLL 508
I++VWNHNL +E +I Q + + +VAMDTEFPG+V + + + +Y Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 509 RCNVDLLRIIQLGLTFMDENGKTPPGYTT----WQFNFK 613
+ NV++L++IQLGLT DE G P T WQFNF+
Sbjct: 76 KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFR 114
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
FN+ DM+A DSI+LL+ S + K+ E G++
Sbjct: 116 FNVISDMFALDSIELLRKSAIDLEKNNECGVD 147
>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = +2
Query: 347 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEF--RSTADYQYQLLRCNV 520
I+DVW +NL EF +IR +V+ Y +++MDTEFPGV+ + + R +Y Y LL+ NV
Sbjct: 14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV 73
Query: 521 DLLRIIQLGLTFMDENGKTPP--GYTT----WQFNFK 613
D L +IQ+GLT D +G P G W+FNF+
Sbjct: 74 DALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFR 110
Score = 35.1 bits (77), Expect = 0.047
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +3
Query: 612 NFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
+F+++ D +A DSI+LL+ G+ F ++ +G+E
Sbjct: 111 DFDVERDPHAPDSIELLRRHGIDFERNRREGVE 143
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 80.6 bits (190), Expect = 9e-16
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 7/103 (6%)
Frame = +2
Query: 326 PGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQL 505
P G ++VW NL EF++I +++ Y +++MDTEFPGV+ + F + D Y L
Sbjct: 12 PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 70
Query: 506 LRCNVDLLRIIQLGLTFMDENGKTPP-------GYTTWQFNFK 613
L+ NVD L +IQ+GLT D NG P G+ W+FNF+
Sbjct: 71 LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGF-IWEFNFR 112
Score = 34.7 bits (76), Expect = 0.062
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 612 NFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
+F++ D +A DSI+LL+ G+ F ++ DG+E
Sbjct: 113 DFDVARDAHAPDSIELLRRQGIDFERNCRDGVE 145
>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 360
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/85 (30%), Positives = 48/85 (56%)
Frame = +2
Query: 356 VWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRI 535
VW N+ EE + + ++++ +A DTE+PG++ R F S++D Y+ ++ NV+ ++
Sbjct: 12 VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENTKL 69
Query: 536 IQLGLTFMDENGKTPPGYTTWQFNF 610
IQ G T + G+ W+ NF
Sbjct: 70 IQCGFTLFNAKGEIG---GVWEINF 91
>At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,
putative contains similarity to SWISS-PROT:Q9UFF9
CCR4-NOT transcription complex, subunit 8 (CAF1-like
protein, CALIFp) [Human]
Length = 302
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/85 (32%), Positives = 44/85 (51%)
Frame = +2
Query: 353 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 532
+VW N E IR ++ + +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 60
Query: 533 IIQLGLTFMDENGKTPPGYTTWQFN 607
+IQLG T D G T TW+ N
Sbjct: 61 LIQLGFTLFDRRGIT----KTWEIN 81
>At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 310
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/85 (31%), Positives = 42/85 (49%)
Frame = +2
Query: 353 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 532
+VW N E IR ++ +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 65
Query: 533 IIQLGLTFMDENGKTPPGYTTWQFN 607
+IQLG T D G TW+ N
Sbjct: 66 LIQLGFTLFDRRGFA----KTWEIN 86
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +2
Query: 389 IIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDEN 568
+I ++ Y ++A+DTEFP + +T + +Y + +VD ++IQLGLT D N
Sbjct: 3 LIEDCLRSYRFIAIDTEFPSTLRETTQH--ATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60
Query: 569 GKTPPGYTTWQFNF 610
G+ TW+ NF
Sbjct: 61 GRIG---GTWEINF 71
>At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 353 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 532
+VW N E IR ++ + +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKET--PMDASDEIRYRDMKFNVDNTH 61
Query: 533 IIQLGLTFMDENGKTPPGYT-TWQFN 607
+IQLGLT GK G T TW+ N
Sbjct: 62 LIQLGLTLF---GK---GITKTWEIN 81
>At3g16060.1 68416.m02030 kinesin motor family protein similar to
kinesin heavy chain member 2 GB:NP_032468 from [Mus
musculus]; contains Pfam profile PF00225: Kinesin motor
domain
Length = 684
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Frame = +2
Query: 113 EMYSN*YHSNIQCSLITC----SGCFKRPSTGA*FVQNTQNKSKTTASKKTDNSSRLETD 280
E+ + + N + +I+C SG + + ++ SK ASKK +SS +
Sbjct: 451 EVLRDSFMGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNASKKDVSSSTMNLR 510
Query: 281 KRYKMPSASFGSISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHW 421
+ K+P +S ++ P D + ++W ++EF K W
Sbjct: 511 ESTKIPLSS--ALPTPSNFDDDVNEMWTEE-NDEFDASDYEQDKQMW 554
>At3g27860.1 68416.m03474 PWWP domain-containing protein
Length = 652
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -2
Query: 700 SSSC--FLNCRP--EFCNRSIESCAYISSCRLKFKVELPS 593
S SC F+N E NRS+E C + ++ + FK+E PS
Sbjct: 550 SCSCVAFVNASDGEEAFNRSLEKCPFATTSTVTFKLEYPS 589
>At3g49280.1 68416.m05386 hypothetical protein
Length = 176
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 365 DSKHLLYHNHCPLEVI--WNQNLRTASCIVYPFPNE-KNYLFFSTPW 234
D K + + + P E + WN+N+ T SC++ +P E + +LFF P+
Sbjct: 45 DYKAIWFSDATPKERMLKWNKNVGT-SCLLCNYPLETREHLFFQCPY 90
>At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1) /
gibberellin-responsive protein 1 identical to SP|P46689
Gibberellin-regulated protein 1 precursor {Arabidopsis
thaliana}; supporting cDNA
gi|887938|gb|U11766.1|ATU11766
Length = 98
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 712 GSIPSSSCFLNCRPEFCNRSIESCAYISSC 623
GS + C L+ RP C+R+ +C Y +C
Sbjct: 41 GSACVARCRLSRRPRLCHRACGTCCYRCNC 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,006,804
Number of Sequences: 28952
Number of extensions: 342539
Number of successful extensions: 934
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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