Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0050
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    28   4.2  
At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    27   5.5  
At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At1g33600.1 68414.m04159 leucine-rich repeat family protein cont...    27   9.7  
At1g33440.1 68414.m04139 proton-dependent oligopeptide transport...    27   9.7  

>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 177 VQYFISRMNPYSPELNYFL---SYQYCRSL--GLQLASFETKEKADSITTYLTNAGYNKY 341
           V+YF+S++N Y  E +  L   S Q   S   G+    F   E A ++   ++   ++K+
Sbjct: 177 VRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRASEIAAAVALSVSGEHFDKF 236

Query: 342 DFWTSGNNL 368
            F +S ++L
Sbjct: 237 SFSSSFSSL 245


>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -3

Query: 399 RCSSTKTCL----CRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRT 274
           + S  KTCL    C G+Y   +S++C    +L +S +NL + SS T
Sbjct: 356 KSSCAKTCLGNSSCVGFYHKEKSNLC---KILLESPNNLKNSSSET 398


>At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 825

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 201 NPYSPELNYFL-SYQYCRSLGLQLASFETKEKADSITTYLTNAGYNKYDFWTSGNNL 368
           NP+    N  L SY   R L L    FE   + DS+T      GY K   +T   +L
Sbjct: 181 NPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHL 237


>At1g33600.1 68414.m04159 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to
           gi|9294355|dbj|BAB02252 [Arabidopsis thaliana]
          Length = 478

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 309 TYLTNAGYNKYDFWTSGNNLGTDM 380
           T+  N  +N Y+F  SGN L  DM
Sbjct: 385 TWFFNLAHNLYEFQASGNKLRFDM 408


>At1g33440.1 68414.m04139 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 601

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
 Frame = +3

Query: 174 GVQYFISRMNPYSPELNYFLSYQYCR-SLGLQLASFETKEKADSITTYLTNAGYNKYDFW 350
           G+  F  + +  S + ++  +  YC  S G  L+S        ++    ++ G    + W
Sbjct: 477 GLVEFFYKQSSQSMQ-SFLTAMTYCSYSFGFYLSSV----LVSTVNRVTSSNGSGTKEGW 531

Query: 351 TSGNNLGTDM---FLWMSTGLPFNATFNYM---RRLPIDAPAQHADDSMDPLD 491
              N+L  D    F W+   L F   FNY+   R    D  A H    ++ L+
Sbjct: 532 LGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWYSCDPSATHHSAEVNSLE 584


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,194,044
Number of Sequences: 28952
Number of extensions: 226125
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)