Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0136
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34580.1 68417.m04913 SEC14 cytosolic factor, putative / phos...    31   0.78 
At3g47090.1 68416.m05113 leucine-rich repeat transmembrane prote...    29   3.1  
At5g59700.1 68418.m07484 protein kinase, putative similar to rec...    28   5.5  
At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family prot...    28   7.2  
At1g79830.1 68414.m09326 expressed protein weak similarity to TA...    27   9.6  

>At4g34580.1 68417.m04913 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           phosphatidylinositol transfer-like protein III
           (GI:14486705) [Lotus japonicus]; similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus]; similar SEC14 protein,
           Saccharomyces cerevisiae, PIR2:A30106; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus
          Length = 560

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 398 QYASNMAQAVLSELTTILNSMEIALHTRLKVLTSDTKKRKNKKII 532
           Q A N  Q +  ELT    ++E AL ++ ++L    KK+K KK++
Sbjct: 506 QAALNRVQVLEQELTETKKALEEALVSQKEILAYIEKKKKKKKLV 550


>At3g47090.1 68416.m05113 leucine-rich repeat transmembrane protein
           kinase, putative receptor kinase-like protein (Xa21),
           Oryza longistaminata, U72725
          Length = 1009

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +2

Query: 242 LSRNDFG-IIPTEIADILEASSEHLYRIYLSIMANTLALKKTKNITDC--LIYRDQYASN 412
           LS N FG  IP E+ ++           YL++  N L  +   ++++C  L+Y D +++N
Sbjct: 97  LSNNSFGGTIPQEMGNLFRLK-------YLAVGFNYLEGEIPASLSNCSRLLYLDLFSNN 149

Query: 413 MAQAVLSELTTI 448
           +   V SEL ++
Sbjct: 150 LGDGVPSELGSL 161


>At5g59700.1 68418.m07484 protein kinase, putative similar to
           receptor-like protein kinase [Catharanthus roseus]
           gi|1644291|emb|CAA97692
          Length = 829

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
 Frame = +2

Query: 344 TLALKKTKNITDCLIYRDQYASNMAQAVLS--ELTTILNSM-EIALHTRLKVLTSDTKKR 514
           T + K TK I    I R    ++   A+L+  E+  + NS  ++++ T L   +S T K 
Sbjct: 344 TGSAKLTKRIR-VSIGRSSVHTDYPTAILNGLEIMKMNNSKSQLSIGTFLPSGSSSTTK- 401

Query: 515 KNKKIIVGVT-GSIV-IAVLAAFFVQSLKR 598
           KN  +I+G+T GS++ + VL  FFV   KR
Sbjct: 402 KNVGMIIGLTIGSLLALVVLGGFFVLYKKR 431


>At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family protein
           contains Mpv17 / PMP22 family domain, Pfam:PF04117
          Length = 254

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 197 LLGDLKIGLMKPS*VLSRNDFGIIPTEIADILEASSEHLYRIYLSIMAN 343
           LL  LK GLM    V     F  +P  +  ++ +S  +++ IYL+ MAN
Sbjct: 201 LLPTLKNGLMYWP-VCDFVTFKYVPVHLQPLMNSSCAYIWTIYLTYMAN 248


>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
           element modulatory factor (TMF) (Swiss-Prot:P82094)
           [Homo sapiens]
          Length = 927

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 347 LALKKTKNITDCLIYRDQYASNMAQAVLSELTTILNSMEIALHTRLKVLTSDTKKRKNK 523
           L L+KTK     L    Q A+  AQA   E+  +++  E     +LK +T D K++ N+
Sbjct: 340 LELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENE-----QLKSVTEDLKRKSNE 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,851
Number of Sequences: 28952
Number of extensions: 293476
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)