Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0129
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 390 e-109
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 389 e-109
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 389 e-109
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 389 e-109
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 389 e-109
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 373 e-104
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 323 7e-89
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 155 3e-38
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 153 9e-38
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 151 3e-37
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 151 3e-37
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 151 4e-37
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 151 4e-37
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 151 4e-37
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 151 5e-37
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 148 3e-36
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 88 4e-18
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 85 3e-17
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 36 0.029
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.20
At2g40070.1 68415.m04923 expressed protein 33 0.20
At3g08670.1 68416.m01007 expressed protein 31 0.47
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.62
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.1
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 29 1.9
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 4.4
At2g15020.1 68415.m01710 expressed protein and genefinder 28 4.4
At1g68080.1 68414.m07777 expressed protein 28 4.4
At1g62870.1 68414.m07099 expressed protein 28 4.4
At3g11690.1 68416.m01433 expressed protein 27 7.7
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 27 7.7
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 390 bits (959), Expect = e-109
Identities = 173/208 (83%), Positives = 193/208 (92%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
AEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDL 541
KRTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T++AE ++R+DHKFDL
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDL 397
Query: 542 MYAKRAFVHWYVGXGMXXGXFSEARXDL 625
MYAKRAFVHWYVG GM G FSEAR DL
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 389 bits (958), Expect = e-109
Identities = 173/207 (83%), Positives = 192/207 (92%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISA
Sbjct: 219 IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA 278
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
EKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTK
Sbjct: 279 EKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
RTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T++AE ++R+DHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 398
Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
YAKRAFVHWYVG GM G FSEAR DL
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 389 bits (958), Expect = e-109
Identities = 173/207 (83%), Positives = 192/207 (92%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISA
Sbjct: 219 IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISA 278
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
EKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTK
Sbjct: 279 EKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
RTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T++AE ++R+DHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 398
Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
YAKRAFVHWYVG GM G FSEAR DL
Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 389 bits (957), Expect = e-109
Identities = 174/208 (83%), Positives = 189/208 (90%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
A KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDL 541
KRT+QFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN TA+AE ++R+DHKFDL
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 397
Query: 542 MYAKRAFVHWYVGXGMXXGXFSEARXDL 625
MYAKRAFVHWYVG GM G FSEAR DL
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 389 bits (957), Expect = e-109
Identities = 174/208 (83%), Positives = 189/208 (90%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
A KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDL 541
KRT+QFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN TA+AE ++R+DHKFDL
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 397
Query: 542 MYAKRAFVHWYVGXGMXXGXFSEARXDL 625
MYAKRAFVHWYVG GM G FSEAR DL
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 373 bits (918), Expect = e-104
Identities = 165/208 (79%), Positives = 184/208 (88%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
DIERPTY+NLNRLI Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 DIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
+ KAYHEQ SV EIT + FEP+N M KCDPRHGKYMACC++YRGDVVPKDVN A+A IK
Sbjct: 278 SAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKA 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDL 541
KRTIQFVDWCPTGFK GINYQPP+VVPGGDLA VQRAVCM+SN TA+AE ++R+DHKFDL
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 397
Query: 542 MYAKRAFVHWYVGXGMXXGXFSEARXDL 625
MY+KRAFVHWYVG GM G FSEAR DL
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDL 425
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 323 bits (793), Expect = 7e-89
Identities = 143/169 (84%), Positives = 160/169 (94%)
Frame = +2
Query: 2 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS 181
+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVIS
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVIS 277
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKT 361
AEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKT
Sbjct: 278 AEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKT 337
Query: 362 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAE 508
KRTIQFVDWCPTGFK GINYQPPTVVPGGDLA VQRAVCM+SN+T++AE
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 155 bits (375), Expect = 3e-38
Identities = 72/207 (34%), Positives = 117/207 (56%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ P++ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 218 LSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 277
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I ++ K
Sbjct: 278 GSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNK 337
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
+ FV+W P K + PPT ++ A + N+T+I E + R+ +F M
Sbjct: 338 NSSYFVEWIPNNVKSSVCDIPPT--------GIKMASTFVGNSTSIQEMFRRVSEQFTAM 389
Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
+ ++AF+HWY G GM F+EA ++
Sbjct: 390 FRRKAFLHWYTGEGMDEMEFTEAESNM 416
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 153 bits (371), Expect = 9e-38
Identities = 72/207 (34%), Positives = 116/207 (56%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ P++ +LN LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 218 LSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 277
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I I+ K
Sbjct: 278 GSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNK 337
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
+ FV+W P K + PP ++ A + N+T+I E + R+ +F M
Sbjct: 338 NSSYFVEWIPNNVKSSVCDIPP--------KGLKMAATFVGNSTSIQEMFRRVSEQFTAM 389
Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
+ ++AF+HWY G GM F+EA ++
Sbjct: 390 FRRKAFLHWYTGEGMDEMEFTEAESNM 416
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 151 bits (367), Expect = 3e-37
Identities = 72/207 (34%), Positives = 116/207 (56%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ PT+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + I+ K
Sbjct: 277 GSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNK 336
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
+ FV+W P K + + P G ++ A + N+T+I E + R+ +F M
Sbjct: 337 NSSYFVEWIPNNVKSSV----CDIAPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAM 388
Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
+ ++AF+HWY G GM F+EA ++
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 151 bits (367), Expect = 3e-37
Identities = 70/207 (33%), Positives = 116/207 (56%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K
Sbjct: 277 GSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNK 336
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
+ FV+W P K + PPT ++ A + N+T+I E + R+ +F M
Sbjct: 337 NSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAM 388
Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
+ ++AF+HWY G GM F+EA ++
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 151 bits (366), Expect = 4e-37
Identities = 70/204 (34%), Positives = 115/204 (56%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSS 339
Query: 374 QFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 553
FV+W P K + PPT ++ A + N+T+I E + R+ +F M+ +
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391
Query: 554 RAFVHWYVGXGMXXGXFSEARXDL 625
+AF+HWY G GM F+EA ++
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNM 415
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 151 bits (366), Expect = 4e-37
Identities = 70/204 (34%), Positives = 115/204 (56%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSS 339
Query: 374 QFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 553
FV+W P K + PPT ++ A + N+T+I E + R+ +F M+ +
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391
Query: 554 RAFVHWYVGXGMXXGXFSEARXDL 625
+AF+HWY G GM F+EA ++
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNM 415
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 151 bits (366), Expect = 4e-37
Identities = 71/207 (34%), Positives = 115/207 (55%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 184
+ PT+ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 217 LANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 276
Query: 185 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 364
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K
Sbjct: 277 GSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNK 336
Query: 365 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLM 544
+ FV+W P K + PT ++ A + N+T+I E + R+ +F M
Sbjct: 337 NSSYFVEWIPNNVKSSVCDIAPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAM 388
Query: 545 YAKRAFVHWYVGXGMXXGXFSEARXDL 625
+ ++AF+HWY G GM F+EA ++
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 151 bits (365), Expect = 5e-37
Identities = 70/204 (34%), Positives = 115/204 (56%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS 339
Query: 374 QFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 553
FV+W P K + PPT ++ A + N+T+I E + R+ +F M+ +
Sbjct: 340 YFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391
Query: 554 RAFVHWYVGXGMXXGXFSEARXDL 625
+AF+HWY G GM F+EA ++
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNM 415
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 148 bits (358), Expect = 3e-36
Identities = 69/204 (33%), Positives = 114/204 (55%)
Frame = +2
Query: 14 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 193
P++ +LN LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 194 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 373
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 280 QYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS 339
Query: 374 QFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 553
FV+W P K + + P G + A + N+T+I E + R+ +F M+ +
Sbjct: 340 YFVEWIPNNVKSSV----CDIAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391
Query: 554 RAFVHWYVGXGMXXGXFSEARXDL 625
+AF+HWY G GM F+EA ++
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNM 415
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 88.2 bits (209), Expect = 4e-18
Identities = 49/196 (25%), Positives = 100/196 (51%), Gaps = 6/196 (3%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-IS 181
+ PT+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ +
Sbjct: 220 LTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE 279
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAI 346
+ + +V ++ + N MV R+ KY++ + +G+V P V+ ++
Sbjct: 280 RQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339
Query: 347 ATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLD 526
I+ ++ + F+DW P +V ++ + P V ++ + ML++ T+I ++R
Sbjct: 340 QRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL-----MLASHTSIRHLFSRCL 394
Query: 527 HKFDLMYAKRAFVHWY 574
++D + K+AF+ Y
Sbjct: 395 SQYDKLRKKQAFLDNY 410
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 85.4 bits (202), Expect = 3e-17
Identities = 47/196 (23%), Positives = 100/196 (51%), Gaps = 6/196 (3%)
Frame = +2
Query: 5 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-IS 181
+ PT+ N L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ +
Sbjct: 220 LTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVE 279
Query: 182 AEKAYHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAI 346
+ + +V ++ + N MV R+ KY++ + +G+V P V+ ++
Sbjct: 280 RQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESL 339
Query: 347 ATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAXVQRAVCMLSNTTAIAEAWARLD 526
I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I +++
Sbjct: 340 QRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCL 394
Query: 527 HKFDLMYAKRAFVHWY 574
++D + K+AF+ Y
Sbjct: 395 SQYDKLRKKQAFLDNY 410
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 35.5 bits (78), Expect = 0.029
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 58 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLPTGHVRASHLCREG 192
L C RRR GP RV + L PP P+ + V + L REG
Sbjct: 97 LQRCIIARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREG 141
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 343 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 236
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.7 bits (71), Expect = 0.20
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Frame = +3
Query: 135 TPVSTS-HWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTV 311
TP+S S S +R + +PT ++ S S T S+P T +A P ++T L+ T
Sbjct: 236 TPMSRSTSLSSSRLTPTASKPTTSTARSAGSVTR-STPSTTTKSAGPSRSTTPLSRS-TA 293
Query: 312 VTSYPRM*TRPSLPSKPSVLSNSSTGVQPV-SRSVSTTSHPP 434
+S P +RP+LP ++ +S+ +P+ S S +TT+ P
Sbjct: 294 RSSTPT--SRPTLPPSKTISRSSTPTRRPIASASAATTTANP 333
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 31.5 bits (68), Expect = 0.47
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +3
Query: 102 TSPSSRLTWCLTPVSTSHWSRTRQSSLPR--RPTMNSFPSPRSQTHASSPPTRW*NATPV 275
+SPSSR + P + + S +SS P RP +S +++ SS P +TP
Sbjct: 194 SSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRP-----STPT 248
Query: 276 MASTWLAVCCTVVTSYPRM*TRPSLPSK--PSVLSNSSTGVQPVS 404
A ++ S P +RPS P++ PS S S+T +S
Sbjct: 249 SRPQLSASSPNIIASRPN--SRPSTPTRRSPSSTSLSATSGPTIS 291
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.62
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 92 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 232
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 424 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 320
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 29.5 bits (63), Expect = 1.9
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Frame = +3
Query: 102 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMN------SFPSPRSQTHASSPP----T 251
+ PSSR T + + S+ R SS+P++ T S SP+ S P T
Sbjct: 107 SDPSSRPTRSGSTIRPSNIPTIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRKT 166
Query: 252 RW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLP-SKPSVLSNSSTGVQPVSRSVSTTSH 428
+TP ST + + T+ +R P +KP + +N+S+ RS S TS
Sbjct: 167 PSPTSTPSRISTTTSTTPSFKTAGDAQRSRSLTPRAKPQIAANASSRTN--VRSSSVTSR 224
Query: 429 P 431
P
Sbjct: 225 P 225
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 308 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 451
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 86 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 262
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 382 DELDSTLGFDGSDGRVHILGYDVTTVQ 302
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 117 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 248
R + C S S+ SRT L R P NS P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At3g11690.1 68416.m01433 expressed protein
Length = 252
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 135 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 314
TP S+ S RQ L R +++S PSPR+ S+P T A+ W C +V
Sbjct: 21 TPSSSPSRSNRRQPLLQR--SLSS-PSPRASCGGSTPAEFCGGTTASCAAVWCCCPCGLV 77
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 102 TSPSSR-LTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 278
T P+S TW + + ++S T +SLP+ +N + + A+SPP++ PV
Sbjct: 82 TKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVP 141
Query: 279 AS 284
S
Sbjct: 142 VS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,540
Number of Sequences: 28952
Number of extensions: 319926
Number of successful extensions: 1111
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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