Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0121
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34350.1 68414.m04264 expressed protein                             94   1e-19
At5g02630.1 68418.m00199 expressed protein                             29   4.5  
At5g41000.1 68418.m04984 oligopeptide transporter OPT family pro...    28   7.9  
At1g70630.1 68414.m08141 expressed protein                             28   7.9  

>At1g34350.1 68414.m04264 expressed protein
          Length = 163

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/121 (33%), Positives = 71/121 (58%)
 Frame = +2

Query: 131 DFVSXLXXIXWRDPWXIALISFHIIITVTCFSTRNYGNFQVXXXXXXXXXVYFSENINEL 310
           +F+     I W++PW + L++FH ++ +    +R + NF +         VYF+EN+N  
Sbjct: 36  NFLGFFHAIDWKEPWIMGLMAFHALLLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRE 95

Query: 311 AARNWALFSRQQYFDSKGLFISXVFSIPILLNCMIMVGSWLYQSTQIMTNLKKAQLRQRL 490
             +NW  FS Q YFDS G+F+S ++S P+L+  MI++ + L+    ++   K+A+LR R 
Sbjct: 96  LRKNWKSFSTQNYFDSNGVFLSTLWSGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRA 155

Query: 491 K 493
           +
Sbjct: 156 R 156


>At5g02630.1 68418.m00199 expressed protein
          Length = 428

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 555 NRFFF*SDLTCCCCSLIEFISLRRCL 478
           N+ FF +D+TCCC  +   +    CL
Sbjct: 308 NQIFFLADITCCCAIVFAMVWSMCCL 333


>At5g41000.1 68418.m04984 oligopeptide transporter OPT family
           protein contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 670

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 329 LFSRQQYFDSKGLFISXVFSIPILLNCMIMVGS 427
           LF    YFD    FI      P L+NC +++G+
Sbjct: 250 LFKNTFYFDFSPTFIGCGMICPHLVNCSVLLGA 282


>At1g70630.1 68414.m08141 expressed protein
          Length = 537

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 290 SENINELAARNWALFSRQQYFDSKGLFISXVFSIPILLNC 409
           S+N++E   RNW            G   S  +++P LL C
Sbjct: 158 SDNVSEPKTRNWEYVGNSHLGQLYGSLYSRSYTLPKLLKC 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,786
Number of Sequences: 28952
Number of extensions: 238880
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)