Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0112
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ...    30   1.8  
At3g61840.1 68416.m06943 expressed protein                             29   2.4  
At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00...    29   2.4  
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa...    29   4.1  
At5g04250.1 68418.m00415 OTU-like cysteine protease family prote...    28   5.5  
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea...    28   7.2  
At2g42870.1 68415.m05308 expressed protein                             28   7.2  
At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin...    28   7.2  
At1g21760.1 68414.m02724 F-box family protein Contains PF|00646 ...    27   9.5  

>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 361

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 82  EELKQTSYFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQ 237
           EE K+ S+   Y    FPS   L GG+ R++T  +  GY+ N + ++  Q++
Sbjct: 2   EEGKENSFLCKYCYKTFPSGKAL-GGHIRIHTNENSVGYNGNKKKRLVDQRK 52


>At3g61840.1 68416.m06943 expressed protein
          Length = 175

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 442 ITSSLLXKTYQFIAVSSPTYNLSRGVPPFVWSKFDMGPQISHVGHP 579
           ++S +  K      +SSP  +LSR   PF W + + G    HV HP
Sbjct: 43  LSSPVTTKDVSLSLMSSPDDSLSRASIPFSWEE-EPGKPKHHVRHP 87


>At1g57580.1 68414.m06534 F-box family protein contains Pfam:PF00646
           F-box domain; contains TIGRFAM TIGR01640 : F-box protein
           interaction domain
          Length = 346

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 127 YFPSVFNLSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYN 285
           +FP+ F L GG ++V  +       T P  KI   K+  +H LR+    + +N
Sbjct: 122 FFPTDFTLRGGRQQVIGFAVDQTDRTTPSFKIVNIKEGAVHWLRNDGSIVAFN 174


>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger C3HC4 type (RING finger),  PF02182: YDG/SRA
           domain
          Length = 465

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 148 LSGGNERVNTYGDWFGYHTNPRAKIFKQKQSEIHNLRDMYR 270
           +SGG +    +G+WF Y    R + F  +  E  +L +  R
Sbjct: 276 ISGGYKDDEDHGEWFLYTGRSRGRHFANEDQEFEDLNEALR 316


>At5g04250.1 68418.m00415 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 345

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 630 SLSPLPAVEQGWEHPHIG 577
           SLSP   V Q W HPH G
Sbjct: 84  SLSPTSVVAQDWPHPHQG 101


>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to Myosin heavy chain kinase B (MHCK
           B).(SP:P90648) [Dictyostelium discoideum]
          Length = 495

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 604 AGVGTSTHRGGPREISADPCRTYSKRRVAPPW 509
           + V  ST   GP      PC      RV+PPW
Sbjct: 71  SSVSASTMSSGPASGEGSPCVMSPWARVSPPW 102


>At2g42870.1 68415.m05308 expressed protein
          Length = 118

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 414 SQSRSHRREDHELAAXEDLPVHSRVEPHLQLVQGGATLRLE 536
           S++ +  RED E A  E+  V  ++E   +++ GGA L ++
Sbjct: 39  SETNASVREDREEAEEEEDEVKEKIEALQRIIPGGAALGVD 79


>At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin
           family protein contains Pfam profile: PF03177
           non-repetitive/WGA-negative nucleoporin
          Length = 1464

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 567 RGPPRCVDVPT--PAPPLGVGIG 629
           R  P C+ V +  P+PPLGVG+G
Sbjct: 370 RQTPNCLKVVSTRPSPPLGVGVG 392


>At1g21760.1 68414.m02724 F-box family protein Contains PF|00646
           F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and
           gb|T88189 come from this gene similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 328

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 119 LYEGKYDVCFSSSVISAASVYPGSCST 39
           LY+G Y +  S   I AA +YPG+  T
Sbjct: 206 LYKGTYTLSMSDDKIEAAVLYPGTRPT 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,998
Number of Sequences: 28952
Number of extensions: 326125
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)