Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0109
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    57   1e-08
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    52   4e-07
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin...    49   3e-06
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    49   3e-06
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy...    40   0.002
At1g13050.1 68414.m01513 expressed protein                             28   6.6  
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    27   8.7  
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    27   8.7  

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
 Frame = +3

Query: 309 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 488
           C   + +QI  E   S  Y AM AYF  D +   G AK F +++ EEREHA KL++Y   
Sbjct: 97  CEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNK 156

Query: 489 XG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIRXVIKTCESSFNDY 659
            G   KL   V  L  +    +         +E AL LE  V   +   + +  S  ND 
Sbjct: 157 RGGRVKLQSIVMPLSEFE---HVDKGDALYGMELALSLEKLVNEKLLN-LHSVASKNNDV 212

Query: 660 HLVDY 674
           HL D+
Sbjct: 213 HLADF 217


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 38/115 (33%), Positives = 52/115 (45%)
 Frame = +3

Query: 330 QIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMXGKLTGS 509
           QI  E   S  Y A+ AYF  D V   GFAK F D++ EER HA   ++Y    G     
Sbjct: 96  QINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKL 155

Query: 510 VTDLITYRAPANTSWESGASALEHALKLESDVTNSIRXVIKTCESSFNDYHLVDY 674
            + L+      +        A+E AL LE  +TN     +++     ND  LVD+
Sbjct: 156 QSILMPVSEFDHEEKGDALHAMELALSLEK-LTNEKLLKLQSVGVKNNDVQLVDF 209


>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
           [Arabidopsis thaliana] GI:1246401, GI:8163920
          Length = 255

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
 Frame = +3

Query: 318 MMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMXG- 494
           ++ +QI  E   S  Y +M AYF  D V   G AK F +++ EER HA K ++Y    G 
Sbjct: 97  VINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGG 156

Query: 495 --KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIRXVIKTCESSFNDYHLV 668
             KL   V+ +  +    +        A+E AL LE  +TN     +    S  ND  L 
Sbjct: 157 RVKLHPIVSPISEFE---HAEKGDALYAMELALSLEK-LTNEKLLNVHKVASENNDPQLA 212

Query: 669 DY 674
           D+
Sbjct: 213 DF 214


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
 Frame = +3

Query: 309 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 488
           C   + +QI  E   S  Y A+ AYF  D V   G AK F +++ EEREHA  L++Y   
Sbjct: 95  CEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNK 154

Query: 489 XG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIRXVIKTCESSFNDY 659
            G   KL   V     +  P          A+E AL LE  V   +   + +  S  +D 
Sbjct: 155 RGGRVKLQPMVLPQSEFDHPEK---GDALYAMELALSLEKLVNEKLLN-LHSVASKNDDV 210

Query: 660 HLVDY 674
            L D+
Sbjct: 211 QLADF 215


>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
           hypothetical protein F9F8.14 - Arabidopsis thaliana,
           EMBL:AC009991
          Length = 355

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +3

Query: 333 IQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDY 479
           I  E   S  Y A+ AY   D V   GF K F D++ EER +A K ++Y
Sbjct: 297 IDVEYNVSYVYHALDAYIERDNVGLKGFTKFFNDSSLEERGYAEKFMEY 345


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 485 HXGQADRLRNRPHHVQGPRQHVVGERRISPRARPQAGE*RHQQHP 619
           H G      N PHH Q P+ H V   R+  + R      RHQ  P
Sbjct: 21  HQGGPSSSWNSPHHHQIPQAHSVAPPRVKIKTRG-----RHQTEP 60


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 558 SGASALEHALKLESDVTNSIRXVIKTCESSFN 653
           S  S   H LKL S  T+++R +  +  SSFN
Sbjct: 37  SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 558 SGASALEHALKLESDVTNSIRXVIKTCESSFN 653
           S  S   H LKL S  T+++R +  +  SSFN
Sbjct: 37  SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,002,646
Number of Sequences: 28952
Number of extensions: 226324
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)