Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0104
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat... 56 3e-08
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 31 0.85
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 30 1.5
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 29 2.6
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 29 4.5
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 29 4.5
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 29 4.5
At5g36740.1 68418.m04402 PHD finger family protein 28 6.0
At5g36670.1 68418.m04388 PHD finger family protein 28 6.0
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 28 6.0
At2g30740.1 68415.m03749 serine/threonine protein kinase, putati... 28 7.9
At1g06700.1 68414.m00712 serine/threonine protein kinase, putati... 28 7.9
>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
stress-induced lipocalin [Triticum aestivum] GI:18650668
Length = 186
Score = 56.0 bits (129), Expect = 3e-08
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Frame = +3
Query: 39 DLKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 212
+++ V N+ Y G WYEI+ FP+ + KNG + A Y L D + V N +G +
Sbjct: 6 EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65
Query: 213 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQV 392
+IEG+A D + AKL V F + + DY I + ++ + +
Sbjct: 66 FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122
Query: 393 FVWILSRNKKLEGDA-KTAVDNFIKEHSKEIDSSKLVHTDFSE 518
++WILSR ++E + K V+ ++E D SKL T S+
Sbjct: 123 YLWILSRTAQMEEETYKQLVEKAVEE---GYDISKLHKTPQSD 162
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 120 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 299
EK+GK SS K + + V+ ++D +++ E L K++K T K ++
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572
Query: 300 DGSVQILATDYNNYA 344
Q+L+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/130 (19%), Positives = 57/130 (43%)
Frame = +3
Query: 120 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 299
EK+GK SS K + + V+ ++D +++ E L K++K + K ++
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722
Query: 300 DGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKE 479
Q+L+ + NN A ++ K + +F + K ++ + +++++
Sbjct: 723 VEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIE--VTDNTED 780
Query: 480 IDSSKLVHTD 509
I+ S V +
Sbjct: 781 INRSMQVQKE 790
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 51 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 188
V NFN++ + G WY I+ N + C E+ EGD V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248
>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
similar to SP|P04051 DNA-directed RNA polymerase III
largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
contains InterPro accession IPR000722: RNA polymerase,
alpha subunit
Length = 1328
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 213 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIA 350
Y + ++ KA F G ++DG IL DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 420 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 503
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 420 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 503
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 135 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 242
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 135 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 242
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 96 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 194
+S FP ES+ + K ++ E+KL G + V VKN+++
Sbjct: 14 VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48
>At2g30740.1 68415.m03749 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
esculentum] gi|3668069|gb|AAC61805
Length = 366
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 602 PRNASSIFSVLMFSVFGYHAGAGKFAGFL*KIGMHKFRRVYLFGVLLDEII 450
P NA+ + S + FGYHA G L + VY FGV+L E++
Sbjct: 229 PDNAARLHSTRVLGTFGYHAPEYAMTGQL-----TQKSDVYSFGVVLLELL 274
>At1g06700.1 68414.m00712 serine/threonine protein kinase, putative
similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
esculentum] gi|3668069|gb|AAC61805
Length = 361
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 602 PRNASSIFSVLMFSVFGYHAGAGKFAGFL*KIGMHKFRRVYLFGVLLDEII 450
P NA+ + S + FGYHA G L + VY FGV+L E++
Sbjct: 226 PDNAARLHSTRVLGTFGYHAPEYAMTGQL-----TQKSDVYSFGVVLLELL 271
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,263,910
Number of Sequences: 28952
Number of extensions: 294127
Number of successful extensions: 889
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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