Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0085
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    30   1.3  
At3g24065.1 68416.m03022 expressed protein ; expression supporte...    27   9.5  

>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 938

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 366 LSQVSGVNVSPKNTGDXRIVINYDYYX*FKHXTFKSFRXCGCDSMINVD 512
           +S V+G   SPK +GD   V  Y YY    H TF   + C   +  NVD
Sbjct: 483 ISSVTGAVTSPKLSGDNEEVSCYPYYQ--NHYTFIVVQ-CSQQTTTNVD 528


>At3g24065.1 68416.m03022 expressed protein ; expression supported
           by MPSS
          Length = 135

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = -3

Query: 311 IMTIRIKSTPKALDSNPYYWKCFTSLI*K*NGVSMTAKSYISKYDTE 171
           + T+++ +   ALDS+P+  +C +S +   + V    ++Y+  +DT+
Sbjct: 28  VFTVKVTNN-LALDSHPFTIRCTSSKLDTSSQVLFRGETYVLMFDTD 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,852,125
Number of Sequences: 28952
Number of extensions: 157592
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)