Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0056
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr...    29   2.4  
At5g17160.1 68418.m02010 expressed protein                             29   3.2  
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    28   5.7  
At4g17800.1 68417.m02656 DNA-binding protein-related contains Pf...    27   7.5  
At1g80850.1 68414.m09485 methyladenine glycosylase family protei...    27   9.9  

>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -3

Query: 81  ATTSPPEPRSLIGRVRREQ--ERLALAQK 1
           ATTSP +P+SL  + RRE+  ERL + Q+
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQE 232


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 3   SEPKPTSPARGAPCRSTNEALAETWSQKN 89
           +EP+P+S      CRST+++LA    Q+N
Sbjct: 80  AEPQPSSQLVSRSCRSTSKSLAGDMDQEN 108


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 78  TTSPPEPRSLIGRVRREQ--ERLALAQK 1
           TTSP +P+SL  + RRE+  ERL + Q+
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKILQE 226


>At4g17800.1 68417.m02656 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 292

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 59  GSGGDVVAKEPKTQPSGS 112
           G GGDVV + P+ +P GS
Sbjct: 74  GGGGDVVGRRPRGRPPGS 91


>At1g80850.1 68414.m09485 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 327

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 14  ANLSCSRRTLPINERGSGGDVVAKEPKTQPSGSIDRNLTSTR 139
           A+ SC    L +    SG  V+ +      S S+ RNLT  R
Sbjct: 80  ASSSCESSPLSMTSTSSGKRVLRRSGSVSSSSSLRRNLTEER 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,339
Number of Sequences: 28952
Number of extensions: 172973
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)