Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0305
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai...    32   0.19 
At5g17240.1 68418.m02020 SET domain-containing protein contains ...    28   3.1  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   7.1  
At4g00910.1 68417.m00124 expressed protein contains Pfam profile...    27   7.1  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   7.1  
At5g17530.2 68418.m02057 phosphoglucosamine mutase family protei...    27   9.4  
At5g17530.1 68418.m02056 phosphoglucosamine mutase family protei...    27   9.4  

>At1g66130.1 68414.m07505 oxidoreductase N-terminal
           domain-containing protein similar to AX110P [Daucus
           carota] GI:285739; contains Pfam profile PF01408:
           Oxidoreductase family NAD-binding Rossmann fold
          Length = 364

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 127 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCTTRKTRSTLF 285
           KK   L + P A+D  ++EK+++AC  N       T W + + T  K R T+F
Sbjct: 95  KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIWLHHQRTV-KIRDTMF 146


>At5g17240.1 68418.m02020 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 491

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 64  LKKYALCMLI-KSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 240
           LKK  L + + +  LMT +    KD+ L+   N  + L   +++  CL  + +   ++ W
Sbjct: 57  LKKGELVLKVPRKALMTTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFW 116


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
 Frame = +1

Query: 1    RHEEQLV----NKLKTGDFKT--ENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA 162
            R+EE+L     +KL+ G  K     +PL K+         L   DG+  K +AL  +   
Sbjct: 1110 RNEEKLPCHTSDKLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGR-PKPIALKPLEKL 1168

Query: 163  EDKLKVEKLI------DACLANKGNSPHQTAWNYVKCTTRKTRSTLFSCKHI 300
              K   +KL       D C     N  H  AW+       + R    SC H+
Sbjct: 1169 SSKPSKKKLFLSIPKSDGCARTSINGWHWHAWSLKASAEERARVRGSSCVHM 1220


>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 497

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 110 PRTGNSRRTSLWLKCLMLK 166
           PR+G S+R  LWLK L++K
Sbjct: 25  PRSGLSKRIFLWLKDLVMK 43


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 157 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKC 255
           ++  KL++ KL D  L +   +P +  WN  KC
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKC 365


>At5g17530.2 68418.m02057 phosphoglucosamine mutase family protein
           low similarity to phosphoglucomutase/phosphomannomutase
           [Sphingomonas paucimobilis] GI:6103619; contains
           InterPro accession IPR006352: Phosphoglucosamine mutase
          Length = 581

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 97  SQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGN 219
           SQ +  DG F   +     PN EDK  +E +  A L NK +
Sbjct: 285 SQFLEPDGMFPNHI-----PNPEDKAAMEAITKAVLDNKAD 320


>At5g17530.1 68418.m02056 phosphoglucosamine mutase family protein
           low similarity to phosphoglucomutase/phosphomannomutase
           [Sphingomonas paucimobilis] GI:6103619; contains
           InterPro accession IPR006352: Phosphoglucosamine mutase
          Length = 581

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 97  SQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGN 219
           SQ +  DG F   +     PN EDK  +E +  A L NK +
Sbjct: 285 SQFLEPDGMFPNHI-----PNPEDKAAMEAITKAVLDNKAD 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,074
Number of Sequences: 28952
Number of extensions: 220047
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)