Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    27   5.2  
At2g22600.1 68415.m02679 KH domain-containing protein                  27   5.2  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    26   6.8  
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat...    26   9.0  
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    26   9.0  

>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 247 PTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLP 140
           P K  I   +SA  +Q      HT    PG PP  P
Sbjct: 431 PNKSYIPRCSSAPVTQSTTTTAHTYPSSPGVPPSQP 466


>At2g22600.1 68415.m02679 KH domain-containing protein 
          Length = 632

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 169 PRPGFPPPLPIKKYKTL 119
           P  G+PPPL IK Y++L
Sbjct: 214 PLNGYPPPLSIKGYESL 230


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 235  SISSNTSARTSQKA--VCVQHTQHPRPGFPPPLPIKKYKTL*KAVLYVIFYFTD 80
            S+ SN     S +   VC Q+ +HP     P + I  YK L K  ++ +    D
Sbjct: 2065 SVKSNAVLAVSLRGDGVCAQNLRHPTGSSSPMVGITAYKPLSKDNVHCLVLHDD 2118


>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor. [Spinach]{Spinacia
           oleracea}
          Length = 563

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 250 HPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPIKKYKT 122
           HP+++S+   TS+R+    + ++        FP   PI ++ T
Sbjct: 25  HPSRLSLLRRTSSRSPPSTISLRSLSVQPLSFPLLKPIPRFST 67


>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 172 HPRPGFPPPLPIKKYKT 122
           HP P  PPP P++ YK+
Sbjct: 328 HPPPPPPPPPPVEYYKS 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,362,816
Number of Sequences: 28952
Number of extensions: 135526
Number of successful extensions: 316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)