Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0288
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    31   0.86 
At3g04030.2 68416.m00425 myb family transcription factor contain...    29   3.5  
At3g04030.1 68416.m00424 myb family transcription factor contain...    29   3.5  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   3.5  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   3.5  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    27   8.0  

>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 384 LKFFAFVKDRFAFMGLFKIARIFCLDFYLPIKNFSPNLFDSNK 512
           L  F + +DRF   G+  +   F    Y P   F P +F +NK
Sbjct: 556 LSLFPYKQDRFNETGMDSVISRFSTQTYKPPNTFGPYIFKANK 598


>At3g04030.2 68416.m00425 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 393

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 523 RXSSLLLSNKLGEKFFIGR*KSKQKILAILKSPINANLSLTKAKNFRPN 377
           + S +L +N+LG + +IG   S+QK   I++ P+   + LT  +  R N
Sbjct: 261 KNSKMLENNRLGLRTYIGDSTSEQK--EIMEEPLFQRMELTWTEGLRGN 307


>At3g04030.1 68416.m00424 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 388

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 523 RXSSLLLSNKLGEKFFIGR*KSKQKILAILKSPINANLSLTKAKNFRPN 377
           + S +L +N+LG + +IG   S+QK   I++ P+   + LT  +  R N
Sbjct: 256 KNSKMLENNRLGLRTYIGDSTSEQK--EIMEEPLFQRMELTWTEGLRGN 302


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 63  KLEGDAKTAVDNFIKEHSKEIDSSKLVH 146
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 63  KLEGDAKTAVDNFIKEHSKEIDSSKLVH 146
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 51  SRNKKLEGDAKTAVDNFIKEHSKE 122
           +R +K EG+  TA    I+EHSK+
Sbjct: 548 NRKRKAEGECSTAETESIEEHSKD 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,172
Number of Sequences: 28952
Number of extensions: 233322
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)