Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0274
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 58 7e-09
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 58 7e-09
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 57 1e-08
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 54 9e-08
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 51 6e-07
At3g28730.1 68416.m03587 structure-specific recognition protein ... 50 1e-06
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 50 1e-06
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 48 4e-06
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 47 1e-05
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 42 4e-04
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 42 5e-04
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 36 0.024
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 36 0.024
At5g52280.1 68418.m06488 protein transport protein-related low s... 31 0.52
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 29 2.8
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 29 2.8
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p... 29 3.7
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 29 3.7
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ... 28 6.5
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 28 6.5
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 8.5
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb... 27 8.5
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 57.6 bits (133), Expect = 7e-09
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEW 226
+K K +KPKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 227 EQKAAKAKEHMQK 265
E+KAAK K +K
Sbjct: 104 EEKAAKRKAEYEK 116
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 57.6 bits (133), Expect = 7e-09
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEW 226
+K K +KPKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 227 EQKAAKAKEHMQK 265
E+KAAK K +K
Sbjct: 104 EEKAAKRKAEYEK 116
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD--KTEWEQ 232
KK+K KPK+P+SAY+++ N R +K EN V E+AK GE WK++ + K ++Q
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEEKKAPYDQ 295
Query: 233 KAAKAKE 253
A K KE
Sbjct: 296 MAKKNKE 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWE 229
+KK K + KRP + Y+LW ++K +NP E + G WK S ++K +E
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYE 179
Query: 230 QKAAKAKE 253
+K KE
Sbjct: 180 EKYQADKE 187
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWEQKAAKAK 250
+KPK+P S+Y L+ AR+ + E+PG+ + + W + ++K + KAA+
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELM 429
Query: 251 EHMQK 265
E +K
Sbjct: 430 EAYKK 434
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 54.0 bits (124), Expect = 9e-08
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWE 229
+K ++KPKRP++A+ ++++ R+ KSE+ G + AK GGE WKS+ ++K +
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYL 165
Query: 230 QKAAKAKEHMQKT 268
KAA+ K K+
Sbjct: 166 DKAAELKAEYNKS 178
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE--WEQ 232
KK K KPK P+SA++++ N R ++ EN V E+AK GE WK++ DK + +E+
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNLSDKKKAPYEK 304
Query: 233 KAAKAKE 253
A K KE
Sbjct: 305 VAKKNKE 311
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 50 AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTE 223
A +KK K + KRP S+Y+LW ++K ENP E + G WKS+ +DK
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKP 186
Query: 224 WEQKAAKAKE 253
+E++ KE
Sbjct: 187 YEERYQVEKE 196
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWK--SMKDKTEWEQKAAKAK 250
+KPK+P S+Y L+ R+++ E PG + WK S ++K + KAAK
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLM 436
Query: 251 EHMQK 265
E +K
Sbjct: 437 EAYKK 441
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +2
Query: 59 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWEQ 232
KK K + PKR MS +M + R+ IK E+PG+ E+ K G+ W+ M DK +E
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEA 613
Query: 233 KAAKAKE 253
KA K+
Sbjct: 614 KAQVDKQ 620
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD--KTEWEQKA 238
K +KPKRP SA+ +++ RE K ENP V + K G+ WKS+ D K + KA
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 239 AKAKEHMQK 265
K K +K
Sbjct: 93 EKRKVEYEK 101
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD--KTEWEQKA 238
K +KPKRP SA+ +++ R K E+P V + K GGE WKS+ D K + KA
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 239 AKAKEHMQK 265
K K +K
Sbjct: 90 DKRKVEYEK 98
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Frame = +2
Query: 56 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM--KDKTE 223
+K VK+ K PK+P +A+ +L+ R+Q + ENP ++ + EI K GE WK+M ++K +
Sbjct: 53 KKPVKLQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVK 112
Query: 224 WEQKAAKAKEHMQK 265
+ A + +E +
Sbjct: 113 YYDIATEKREEFHR 126
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +2
Query: 56 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM--KDKTEW 226
+K K ++PKRP SA+ ++L R++ NP + V + K G WK+M +DK +
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPY 85
Query: 227 EQKAAKAKEHMQKT*NLTMPMAVVAKGAKR 316
KA K K N+ +A G R
Sbjct: 86 VAKAESRKTEYIK--NVQQYNLKLASGTNR 113
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 53 IRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDKTEWE 229
+ KK K ++PK+P S + ++L+ R++ NP + V + + G+ WK+M TE E
Sbjct: 24 VGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTM---TEEE 80
Query: 230 QKAAKAKEHMQKT 268
+ AK +KT
Sbjct: 81 RAPFVAKSQSKKT 93
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +2
Query: 62 KVKMTDKPKRPMSA--YMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWE 229
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +K ++
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYL 112
Query: 230 QKAAKAKEHMQKT 268
KAA ++ + T
Sbjct: 113 DKAADEEDEDEDT 125
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +2
Query: 62 KVKMTDKPKRPMSA--YMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWE 229
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +K ++
Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYL 113
Query: 230 QKAAKAKEHMQKT 268
KAA ++ + T
Sbjct: 114 DKAADEEDEDEDT 126
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKAKEHMQKT 268
S ++ +N Q+K L + +I M++KTE EQ+A KA+E+++KT
Sbjct: 517 SECLITVNELESQVKELKKELE-DQAQAYDEDIDTMMREKTEQEQRAIKAEENLRKT 572
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 355 QQFSCPFSLVFEPSFRPLRHH 293
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 355 QQFSCPFSLVFEPSFRPLRHH 293
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
protein similar to SP|Q9Y672 Dolichyl pyrophosphate
Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Homo sapiens}; contains Pfam
profile PF03155: ALG6, ALG8 glycosyltransferase family
Length = 533
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 240 AAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTF 61
A C VL+ + F ++ +S P F + L S + + G++VI+TF
Sbjct: 219 AVLCESEVLTCVLFSLALSHKQMSAYFAPAFFSHLLGKCLRRKSPILSVIKLGIAVIVTF 278
Query: 60 FL 55
+
Sbjct: 279 VI 280
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 83 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 214
PKR + Y ++ +IK+EN G +V+ K G +W ++ +
Sbjct: 215 PKRQRTGYNFFVAEQSVRIKAENAGQKVSS-PKNFGNMWTNLSE 257
>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
(Crd1) similar to leucine-containing zipper protein
At103 GP:6911864; contains Pfam profile PF05447: Copper
response defect 1 (CRD1)
Length = 409
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 7 QFGCVPVQKLFQNFCHQEKSQND 75
+F C P+ K F+N+C E D
Sbjct: 239 EFQCYPIFKYFENWCQDENRHGD 261
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 234 FCSHSVLSFIDFQISPPFLAISVT 163
FC+ SV ++FQI PP + VT
Sbjct: 139 FCADSVFPLLNFQIDPPVQKLYVT 162
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 606 LFNCIYNQIQCSKDDSNSH*MLIKINVKCISSDLKAV 496
L +C+ + + CS + NSH + N + SS +KAV
Sbjct: 734 LRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAV 770
>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
gb|AA595092 come from this gene
Length = 234
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 86 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWEQKAAKAKE 253
KR +++ + ++KSE PGL T+ ++WK D + AA A E
Sbjct: 179 KRLKASFKAYEEVELPRLKSEKPGLTHTQYKDLIWKMWKKSPDNPLNQAAAAAANE 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,551
Number of Sequences: 28952
Number of extensions: 184118
Number of successful extensions: 621
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -