Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0229
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26300.1 68415.m03156 guanine nucleotide binding protein (G-p... 80 1e-15
At2g15310.1 68415.m01746 ADP-ribosylation factor, putative simil... 44 1e-04
At5g14670.1 68418.m01719 ADP-ribosylation factor, putative simil... 43 2e-04
At2g47170.1 68415.m05890 ADP-ribosylation factor 1 (ARF1) identi... 43 2e-04
At1g70490.3 68414.m08112 ADP-ribosylation factor, putative nearl... 43 2e-04
At1g70490.2 68414.m08111 ADP-ribosylation factor, putative nearl... 43 2e-04
At1g70490.1 68414.m08110 ADP-ribosylation factor, putative nearl... 43 2e-04
At1g23490.1 68414.m02948 ADP-ribosylation factor identical to SP... 43 2e-04
At1g10630.1 68414.m01205 ADP-ribosylation factor, putative simil... 43 2e-04
At3g62290.1 68416.m06998 ADP-ribosylation factor identical to GP... 42 4e-04
At5g17060.1 68418.m01999 ADP-ribosylation factor, putative simil... 41 9e-04
At3g03120.1 68416.m00308 ADP-ribosylation factor, putative simil... 40 0.001
At1g09180.1 68414.m01025 GTP-binding protein, putative strong si... 38 0.006
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ... 35 0.042
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ... 35 0.056
At3g22950.1 68416.m02893 ADP-ribosylation factor, putative simil... 32 0.39
At1g64050.1 68414.m07255 expressed protein 32 0.39
At4g02080.1 68417.m00279 GTP-binding protein (SAR1A) identical t... 31 0.52
At3g62560.1 68416.m07028 GTP-binding protein, putative similar t... 31 0.69
At1g56330.1 68414.m06475 GTP-binding protein (SAR1B) identical t... 31 0.69
At5g09850.1 68418.m01139 transcription elongation factor-related... 28 4.9
At5g64470.2 68418.m08100 expressed protein similar to unknown pr... 27 8.5
At5g64470.1 68418.m08099 expressed protein similar to unknown pr... 27 8.5
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a... 27 8.5
At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family pr... 27 8.5
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 27 8.5
>At2g26300.1 68415.m03156 guanine nucleotide binding protein
(G-protein) alpha-1 subunit / GP-alpha-1 (GPA1)
identical to SP|P18064 Guanine nucleotide-binding
protein alpha-1 subunit (GP-alpha-1) {Arabidopsis
thaliana}
Length = 383
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 6/77 (7%)
Frame = +3
Query: 261 KYFLDDLDRLGAKDYQPTEQDILRTXVKTTGIXEVHFSFKNLN------FKLFDVGGQXS 422
KY +++L RL +Y PT++D+L V+TTG+ E+ FS N ++LFDVGGQ +
Sbjct: 165 KYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRN 224
Query: 423 ERKKWIHCFEDVTAIIF 473
ER+KWIH FE VTA+IF
Sbjct: 225 ERRKWIHLFEGVTAVIF 241
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 148 DTEPFSEELLAAMKRLWADSGVQECFGRSNEYQLND 255
D ++++ ++ LW D +QE R NE Q+ D
Sbjct: 127 DYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPD 162
>At2g15310.1 68415.m01746 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor (GI:861205) [Chlamydomonas
reinhardtii]
Length = 205
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 333 TXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXV 479
T V T G +K +NF ++D+GGQ RK W H F++ +IF V
Sbjct: 44 TTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVV 92
>At5g14670.1 68418.m01719 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor DcARF1 (GI:965483) [Daucus
carota].
Length = 188
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>At2g47170.1 68415.m05890 ADP-ribosylation factor 1 (ARF1) identical
to ADP-ribosylation factor ARF1({Arabidopsis thaliana}
(SP:P36397) (GP:166586)
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>At1g70490.3 68414.m08112 ADP-ribosylation factor, putative nearly
identical to ADP-ribosylation factor 1 GB:P36397
[Arabidopsis thaliana], ADP-ribosylation factor
GI:166586 [Arabidopsis thaliana]
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>At1g70490.2 68414.m08111 ADP-ribosylation factor, putative nearly
identical to ADP-ribosylation factor 1 GB:P36397
[Arabidopsis thaliana], ADP-ribosylation factor
GI:166586 [Arabidopsis thaliana]
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>At1g70490.1 68414.m08110 ADP-ribosylation factor, putative nearly
identical to ADP-ribosylation factor 1 GB:P36397
[Arabidopsis thaliana], ADP-ribosylation factor
GI:166586 [Arabidopsis thaliana]
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>At1g23490.1 68414.m02948 ADP-ribosylation factor identical to
SP:Q9SRC3 ADP-ribosylation factor 1-like [Arabidopsis
thaliana], ADP-ribosylation factor GI:166586
[Arabidopsis thaliana]
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>At1g10630.1 68414.m01205 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GI:166586 from [Arabidopsis
thaliana]
Length = 181
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 231 FQRVPTQRSAKYFLDDLDRLGAKD--YQPTEQDILRTXVKTTGIXEVHFSFKNLNFKLFD 404
F R+ ++ + + LD G Y+ +I+ T + T G +KN++F ++D
Sbjct: 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 67
Query: 405 VGGQXSERKKWIHCFEDVTAIIFXV 479
VGGQ R W H F++ +IF V
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVV 92
>At3g62290.1 68416.m06998 ADP-ribosylation factor identical to
GP:166586 ADP-ribosylation factor {Arabidopsis
thaliana}; ADP-ribosylation factor 1 - Arabidopsis
thaliana, PIR:S28875
Length = 181
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 333 TXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXV 479
T + T G +KN++F ++DVGGQ R W H F++ +IF V
Sbjct: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92
>At5g17060.1 68418.m01999 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster)
Length = 192
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 321 DILRTXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
++L T V T G +KN+ F ++DVGGQ R W H F + +I+ V L+ R
Sbjct: 41 EVLST-VPTIGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 99
>At3g03120.1 68416.m00308 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster}
Length = 192
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 321 DILRTXVKTTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
++L T V T G +KN+ F ++DVGGQ R W H F + +I+ V L+ R
Sbjct: 41 EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 99
>At1g09180.1 68414.m01025 GTP-binding protein, putative strong
similarity to SP:Q01474 GTP-binding protein SAR1B and
SP:O04834 GTP-binding protein SAR1A [Arabidopsis
thaliana]
Length = 193
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 372 SFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
S +NFK FD+GG R+ W C+ V A+++ V + R
Sbjct: 60 SIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDR 102
>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 861
Score = 35.1 bits (77), Expect = 0.042
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Frame = +3
Query: 99 PR-KRW*DGVRRDSTDGGHGTVQ*GASRRDEKALGRLWR-SGVLWSFQRV--PTQRSAKY 266
PR K + D V ++ DG +SR + + + LWR + +++R+ R+A Y
Sbjct: 547 PRLKHFSDWVLKEKEDGNLKIFP-PSSRENAQTVADLWRVPAIQATYKRLRDTLPRNAVY 605
Query: 267 FLDDLDRLGAKDYQPTEQDILRTXVKTT--GIXEVHFSF 377
FL+ + + +Y P++ DIL+ ++ G+ V FSF
Sbjct: 606 FLERILEISRSEYDPSDMDILQAEGLSSMEGLSCVDFSF 644
>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
protein / G-protein (XLG) identical to extra-large
G-protein (XLG) [Arabidopsis thaliana] GI:3201680
Length = 888
Score = 34.7 bits (76), Expect = 0.056
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Frame = +3
Query: 99 PR-KRW*DGVRRDSTDGGHGTVQ*GASRRDEKALGRLWRSGVLWSFQRVPTQRS-----A 260
PR K + D + + G G + ASR + LWR + + + ++ A
Sbjct: 581 PRLKAFSDWLLKTMAAGNLGVIFPAASREYAPLVEELWRDAAIQATYKRRSELGLLPSVA 640
Query: 261 KYFLDDLDRLGAKDYQPTEQDIL--RTXVKTTGIXEVHFSFKN----------------L 386
YFL+ + DY+P++ DIL ++G+ + FSF L
Sbjct: 641 SYFLERAIDVLTPDYEPSDLDILYAEGVTSSSGLACLDFSFPQTASEENLDPSDHHDSLL 700
Query: 387 NFKLFDVGGQ-XSERKKWIHCFEDVTAIIFXV 479
++L V + E KWI FEDV ++F V
Sbjct: 701 RYQLIRVPSRGLGENCKWIDMFEDVGMVVFVV 732
>At3g22950.1 68416.m02893 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GB:P91924 [Dugesia japonica]
Length = 183
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 345 TTGIXEVHFSFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
T G +KN+ F+++D+GGQ R W + A+I + + R
Sbjct: 48 TVGSNVEELVYKNIRFEVWDLGGQDRLRTSWATYYRGTHAVIVVIDSTDRAR 99
>At1g64050.1 68414.m07255 expressed protein
Length = 668
Score = 31.9 bits (69), Expect = 0.39
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 320 RYPKDXSQNDWNRRSTFLLQKPQFQIVRRGRAXIGEEEMDSLLRGRDRDHILXAMSEYXQ 499
R+PK SQ R + L++KP + R R + +++S +++H+ +
Sbjct: 537 RWPKKLSQKSMKARKSKLIEKP----LERHRTTVSSIDLNSSNNNNNKNHVRKDSAAEHN 592
Query: 500 VXHRMKHEPYAGELKXSTYLXNNGS-PTHSS 589
H H + LK ST S P+ SS
Sbjct: 593 HHHHHHHPKPSKRLKLSTMENKKRSFPSSSS 623
>At4g02080.1 68417.m00279 GTP-binding protein (SAR1A) identical to
SP:O04834 GTP-binding protein SAR1A. [Arabidopsis
thaliana]
Length = 193
Score = 31.5 bits (68), Expect = 0.52
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Frame = +3
Query: 207 WRSGVLWSFQRVPTQRSAKYFLDDLDRLGAKDY-QPTEQDILRTXVKTTGIXEVHFSFKN 383
W GVL S Q+ AK LD G + + L T S
Sbjct: 6 WFYGVLASLGL--WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63
Query: 384 LNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
+ FK FD+GG R+ W + V A+++ V + R
Sbjct: 64 IKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER 102
>At3g62560.1 68416.m07028 GTP-binding protein, putative similar to
GTP-binding protein SAR1A (SP:O04834) [Arabidopsis
thaliana]; small GTP-binding protein Bsar1a - Brassica
campestris, EMBL:U55035
Length = 193
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 372 SFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
S + FK FD+GG R+ W + V A+++ V + R
Sbjct: 60 SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER 102
>At1g56330.1 68414.m06475 GTP-binding protein (SAR1B) identical to
GTP-binding protein (SAR1B) [Arabidopsis thaliana]
SP:Q01474
Length = 193
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 372 SFKNLNFKLFDVGGQXSERKKWIHCFEDVTAIIFXVPCLNMXR 500
S + FK FD+GG R+ W + V A+++ V + R
Sbjct: 60 SIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER 102
>At5g09850.1 68418.m01139 transcription elongation factor-related
low similarity to SP|P10712 Transcription elongation
factor S-II (Transcription elongation factor A) {Mus
musculus}
Length = 353
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 217 PERQSRPRAFSSRREAPH*TVPCPPSVESRRTP 119
PER+ RP A RRE+P P PS + P
Sbjct: 258 PERKPRPVAPQPRRESPSPAKPSRPSPSQQTIP 290
>At5g64470.2 68418.m08100 expressed protein similar to unknown
protein (gb|AAD15463.1)
Length = 407
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 281 RPVRSKGLPAHRTRYPKDXSQNDWNRRSTFLLQKP 385
R V +K L R + P+ DWN+ + LL KP
Sbjct: 275 REVPAKTLKFWRLQSPRHFYGGDWNQNGSCLLDKP 309
>At5g64470.1 68418.m08099 expressed protein similar to unknown
protein (gb|AAD15463.1)
Length = 325
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 281 RPVRSKGLPAHRTRYPKDXSQNDWNRRSTFLLQKP 385
R V +K L R + P+ DWN+ + LL KP
Sbjct: 275 REVPAKTLKFWRLQSPRHFYGGDWNQNGSCLLDKP 309
>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 1007
Score = 27.5 bits (58), Expect = 8.5
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Frame = +1
Query: 64 MPNLGIIYGNRDRESDGKMVFDV---------IQRMEDTEPFSEELLAAMKRLWADSGV- 213
M N+ ++GNR RESD + + DV + R D +P+ LL M+ DS +
Sbjct: 212 MRNVSQVHGNRVRESDSQRLVDVRALDTVGNSLTRFHD-QPYCNNLLTQMQPSNTDSMLV 270
Query: 214 ---QECFGRSNEYQLNDPL--NISWTTST 285
E GR + +PL +W T
Sbjct: 271 EENSEKGGRLKAEHIRNPLQTQFNWQDDT 299
>At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family
protein / kinesin motor family protein
Length = 919
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 276 RPGNI*RIVELVLVGTTKALLNARVGPEPFHRGEKLLTERF 154
R + R++ GT + L +GP P HRGE T F
Sbjct: 365 RDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMF 405
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 276 RPGNI*RIVELVLVGTTKALLNARVGPEPFHRGEKLLTERF 154
R + R++ GT + L +GP P HRGE T F
Sbjct: 355 RDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETTSTILF 395
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,194,706
Number of Sequences: 28952
Number of extensions: 287825
Number of successful extensions: 844
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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