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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0213
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein...    30   1.6  
At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO ...    28   4.9  
At3g42722.1 68416.m04458 F-box family protein contains F-box dom...    27   8.5  

>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 1080

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 448 WLSDVINAWILPNGAVLQQFQVLTLRTLKQA 540
           WL D+IN   +P G +L Q Q+L   T  ++
Sbjct: 273 WLEDIINGQKVPEGYILMQKQILANDTTSES 303


>At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO
           Domain IPR002109, Glutaredoxin (thioltransferase)
          Length = 630

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 275 TGVPIIDQILFNEKH---LEALKKLANEDEF 358
           TG   + QI FNEKH   L AL  L N  EF
Sbjct: 203 TGSSQVPQIFFNEKHFGGLMALNSLRNSGEF 233


>At3g42722.1 68416.m04458 F-box family protein contains F-box domain
           Pfam:PF00646 ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 129

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 144 LTALFASTACIDYDGFLNMKLEHSLNCNDEKFCH 245
           LT   AST+ +           H+L+CND  FCH
Sbjct: 23  LTNEAASTSILSKRWRTLFAFSHNLDCNDSIFCH 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,248,319
Number of Sequences: 28952
Number of extensions: 153390
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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