Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0210
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 30 1.6
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 30 1.6
At1g70100.3 68414.m08067 expressed protein 30 1.6
At1g70100.2 68414.m08066 expressed protein 30 1.6
At1g70100.1 68414.m08065 expressed protein 30 1.6
At5g26030.1 68418.m03097 ferrochelatase I identical to Swiss-Pro... 29 2.8
At1g70130.1 68414.m08070 lectin protein kinase, putative similar... 29 3.6
At3g59700.1 68416.m06661 lectin protein kinase, putative similar... 28 4.8
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa... 28 6.4
At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containi... 28 6.4
At2g43690.1 68415.m05431 lectin protein kinase, putative similar... 28 6.4
At1g43770.1 68414.m05040 PHD finger family protein contains Pfam... 28 6.4
At3g06300.1 68416.m00723 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 8.4
At1g76410.1 68414.m08881 zinc finger (C3HC4-type RING finger) fa... 27 8.4
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 8.4
At1g31480.1 68414.m03854 shoot gravitropism 2 (SGR2) Plant Cell ... 27 8.4
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)... 27 8.4
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 382 MFNNRHWVFQQDSAPAHRAKSTQDWLRRVKSTSSGTK 272
+FNN W F + S+ AH A Q +VK K
Sbjct: 304 LFNNSKWTFSRTSSAAHAASVVQHAYEKVKKDREQAK 340
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 382 MFNNRHWVFQQDSAPAHRAKSTQDWLRRVKSTSSGTK 272
+FNN W F + S+ AH A Q +VK K
Sbjct: 304 LFNNSKWTFSRTSSAAHAASVVQHAYEKVKKDREQAK 340
>At1g70100.3 68414.m08067 expressed protein
Length = 504
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 325 KSTQDWLRRVKSTSSGTKTGPPPVRFESVRLQDMATLGGKGVLKASS 185
KS Q ++KST G T P V ++ +Q + T G K V A S
Sbjct: 377 KSFQKSFDQMKSTDDGQDTAPKQVLAKATAVQRLGTTGQKNVRLAKS 423
>At1g70100.2 68414.m08066 expressed protein
Length = 482
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 325 KSTQDWLRRVKSTSSGTKTGPPPVRFESVRLQDMATLGGKGVLKASS 185
KS Q ++KST G T P V ++ +Q + T G K V A S
Sbjct: 377 KSFQKSFDQMKSTDDGQDTAPKQVLAKATAVQRLGTTGQKNVRLAKS 423
>At1g70100.1 68414.m08065 expressed protein
Length = 467
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 325 KSTQDWLRRVKSTSSGTKTGPPPVRFESVRLQDMATLGGKGVLKASS 185
KS Q ++KST G T P V ++ +Q + T G K V A S
Sbjct: 377 KSFQKSFDQMKSTDDGQDTAPKQVLAKATAVQRLGTTGQKNVRLAKS 423
>At5g26030.1 68418.m03097 ferrochelatase I identical to
Swiss-Prot:P42043 ferrochelatase I,
chloroplast/mitochondrial precursor (EC 4.99.1.1)
(Protoheme ferro-lyase) (Heme synthetase) [Arabidopsis
thaliana]
Length = 466
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 289 SISRAAASL-VCSSLYELAPNLVGIPSACY*TWYEKQVPQGSSGLYFDTQLHSF 447
SIS +S+ V L+ P L G+P A +WY+++ S + +L +F
Sbjct: 218 SISTTGSSIRVLQDLFRKDPYLAGVPVAIIKSWYQRRGYVNSMADLIEKELQTF 271
>At1g70130.1 68414.m08070 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 656
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 397 VPQGSSGLYFDTQLHSFLHLSHKNVPLVSPNKKLQPYLSE 516
+ +S D +HS + +S +PL+S K L PYL E
Sbjct: 186 IEYNNSTKQLDVTMHS-IKISKPKIPLLSMRKDLSPYLHE 224
>At3g59700.1 68416.m06661 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 661
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 472 PLVSPNKKLQPYLSEDGK*PRWTRGIRCSFFTTGCIHLIIWWWSSLLRENFSSEKEFPIF 651
PL+S N+ L PYL E + G S + G IH ++ W + + E E P+
Sbjct: 213 PLLSLNRDLSPYLLE-----KMYLGFTASTGSVGAIHYLMGWLVNGVIEYPRLELSIPVL 267
Query: 652 FP 657
P
Sbjct: 268 PP 269
>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 1092
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 338 WRR-ILLEYPVPVIEHGMRNRFHKVRQD 418
W R ++L++ +P+++ R +F +VR+D
Sbjct: 926 WTRLVMLDHMLPIVDDSWRAKFERVRED 953
>At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 661
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 478 VSPNKKLQPYLSEDGK*PRWTRGIRCSFFTTGCIHLIIWWWSSLLR 615
VSP+++ YL + + I C +GC+ L + W+SL++
Sbjct: 129 VSPDRQTFLYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVK 174
>At2g43690.1 68415.m05431 lectin protein kinase, putative similar to
receptor-like kinase LECRK1 [Arabidopsis thaliana]
gi|2150023|gb|AAB58725
Length = 664
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 472 PLVSPNKKLQPYLSEDGK*PRWTRGIRCSFFTTGCIHLIIWWW 600
PL+S NK L PYLS++ G S + G IH +W W
Sbjct: 212 PLLSLNKDLSPYLSKN-----MYIGFTASTGSVGAIH-YMWMW 248
>At1g43770.1 68414.m05040 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 371
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 262 EGQSSCRMKSISRAAASLVCSSLYELAPNLVGIPSA 369
+G +SC M I +SL C ++E A +L G SA
Sbjct: 300 KGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSA 335
>At3g06300.1 68416.m00723 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 299
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 246 SNLTGGGPVFVPDEVDFTRRSQS 314
SN+T GG PD +F+RRS S
Sbjct: 164 SNVTKGGETVFPDAQEFSRRSLS 186
>At1g76410.1 68414.m08881 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 310 WLRRVKSTSSGTKTGPPPV 254
WLRR+ S + +T PPPV
Sbjct: 53 WLRRIASRNRSDQTHPPPV 71
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.5 bits (58), Expect = 8.4
Identities = 25/95 (26%), Positives = 39/95 (41%)
Frame = -1
Query: 412 TNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLRRVKSTSSGTKTGPPPVRFESVRL 233
+N V S++ N + + DSA + +Q L S+SS + T P P +V
Sbjct: 84 SNSVRSQSNSSSGNNNLRPRSDSATTSSSSHSQPLL----SSSSSSATSPAPTSPANVLP 139
Query: 232 QDMATLGGKGVLKASSQFGVTQDILD*GSRRY*HG 128
GK + +Q D+L G+ Y HG
Sbjct: 140 TGNICPSGKIQITGMTQSRSRSDVLGSGTGTYGHG 174
>At1g31480.1 68414.m03854 shoot gravitropism 2 (SGR2) Plant Cell
2002 Jan;14:33-46 PMID:11826297; similar to
phospholipase [Homo sapiens] GI:4760647; identical to
cDNA PF02862: DDHD domain
Length = 933
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 268 QSSCRMKSISRAAASLVCSSLYELAPNLVGIP 363
Q + + KSI + + V SSLYE+ VG+P
Sbjct: 126 QVNSKKKSIETPSEASVSSSLYEVEEERVGVP 157
>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
family protein similar to cytosolic leucyl-tRNA
synthetase [Candida albicans] GI:9858190; contains Pfam
profile PF00133: tRNA synthetases class I (I, L, M and
V)
Length = 1084
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -1
Query: 376 NNRHWVFQQDSAPAHRAKSTQDWLRRVKSTSSGTKTGPPPVRFESVRLQDM 224
++ ++ F+ +A R W+ V S +TGPP + V DM
Sbjct: 750 DDANFAFETANAAILRLTKELTWMEEVLDVESSLRTGPPSTYADKVFENDM 800
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,364
Number of Sequences: 28952
Number of extensions: 346646
Number of successful extensions: 1036
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -