Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0199
(663 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 130 6e-31
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 126 1e-29
At1g27270.1 68414.m03322 paired amphipathic helix repeat-contain... 30 1.2
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 3.6
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 3.6
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 4.8
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 8.4
At5g03320.1 68418.m00283 protein kinase, putative similar to ser... 27 8.4
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 130 bits (315), Expect = 6e-31
Identities = 87/197 (44%), Positives = 114/197 (57%), Gaps = 7/197 (3%)
Frame = +3
Query: 69 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 248
MVN R + KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 249 LLPSRRRTPRDC--SKVMPFYVVWFVLEYWMKNR*NSIMCLV*R---LRTSWSVVCRRRC 413
LL + PR + + + + L +N+ + ++ L R ++V +
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSG- 119
Query: 414 SKLAAKSIHHARILIRQRHIRVRKQVVNIPSLLXAWTLQAH*LLS-ESPFXGGRLD-VSR 587
AKSIHHAR+LIRQRHIRV +Q+VNIPS + Q H S SPF GGR V R
Sbjct: 120 ---MAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKR 176
Query: 588 GRTSAGTXWXSRHDEEK 638
AG S D ++
Sbjct: 177 RNERAGAKKASGGDGDE 193
Score = 84.2 bits (199), Expect = 7e-17
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G
Sbjct: 64 LDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSG 119
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 126 bits (305), Expect = 1e-29
Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 6/165 (3%)
Frame = +3
Query: 96 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRTP 275
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LL ++P
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 276 RDC--SKVMPFYVVWFVLEYWMKNR*NSIMCLV*R---LRTSWSVVCRRRCSKLAAKSIH 440
R + + + + L +N+ + ++ L R ++V + AKSIH
Sbjct: 70 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSG----MAKSIH 125
Query: 441 HARILIRQRHIRVRKQVVNIPSLLXAWTLQAH-*LLSESPFXGGR 572
H+R+LIRQRHIRV KQ+VNIPS + Q H SPF GGR
Sbjct: 126 HSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGR 170
Score = 84.2 bits (199), Expect = 7e-17
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +2
Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG 424
L+EK P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G
Sbjct: 64 LDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSG 119
>At1g27270.1 68414.m03322 paired amphipathic helix repeat-containing
protein contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 241
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 251 ELTSSLTDTSERVFDAPYFTLVAETVLSDDLQLLVKTCLFKRTTR 117
E+T LTD R +A E +L D L LL+ C+F TR
Sbjct: 134 EITKLLTDLKARRINAASVIARMEELLKDHLNLLLGFCVFLSPTR 178
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 17 ITSFLILIGEQCVRARQDGEQQSTVGIFKDVRDTSSSF*KGTS*PRVEDHRRV 175
+ SF++L C+R++ G ++T + D+ ++ G P +E + R+
Sbjct: 26 LISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRI 78
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 28.7 bits (61), Expect = 3.6
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = -2
Query: 503 WDVHNL-LADTNMPLPDQNSGMMDGLRSQL*TPASADDAPRSPQSSDQAHNRVSSVFHPV 327
WD+ L L T + N+ M L + + DA + +A + + +
Sbjct: 247 WDMRTLTLIKTYTTVVPVNAVAMSPLLNHV-VLGGGQDASAVTTTDHRAGKFEAKFYDTI 305
Query: 326 LQYEPDDVEGHYLRTISWGPSPRGEELTSSLTDTSERV--FDAPYFTL 189
LQ E V+GH+ + SP G+ +S D R+ FD+ YF +
Sbjct: 306 LQEEIGGVKGHFGPINALAFSPDGKSFSSGGEDGYVRLHHFDSNYFNI 353
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 102 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 218
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 340 TDETRLCAWSED*GLLGASSADAGVQSW 423
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 308 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 409
RL + VLDE++ +D LG+K ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506
>At5g03320.1 68418.m00283 protein kinase, putative similar to
serine/threonine-protein kinase NAK [Arabidopsis
thaliana] SWISS-PROT:P43293
Length = 420
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 214 YLTRHTSRLLRRPYSPMIFNSWSRRA--FSKGRRGVTYVFENTDGTLLFTILASSHALLX 41
Y+ + P SP + +W R RG+TY+ E D ++F SS+ LL
Sbjct: 166 YMPNQSVEFHLSPRSPTVL-TWDLRLRIAQDAARGLTYLHEEMDFQIIFRDFKSSNILL- 223
Query: 40 DKN 32
D+N
Sbjct: 224 DEN 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,330,200
Number of Sequences: 28952
Number of extensions: 270856
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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