Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0191
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15260.1 68418.m01787 expressed protein predicted proteins, A...    29   2.8  
At4g05090.1 68417.m00756 inositol monophosphatase family protein...    27   8.4  

>At5g15260.1 68418.m01787 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 234

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 239 SISCTMLNSYHNTLCLC*RHPGGLLNC 319
           SISCT L+++   + LC RH  G  NC
Sbjct: 117 SISCTALSAWMIVILLCSRHRCGKPNC 143


>At4g05090.1 68417.m00756 inositol monophosphatase family protein
           low similarity to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis
           thaliana}; contains Pfam profile PF00459: Inositol
           monophosphatase family
          Length = 397

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +3

Query: 339 DTFPNFSYVRRSPYLYPPYFSLRTDNMTFSMPMPFNK 449
           DT   FS VR SP   PP  SLR         +PF K
Sbjct: 5   DTGARFSAVRFSPVFNPPPTSLRRRYFIVRANLPFPK 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,898,988
Number of Sequences: 28952
Number of extensions: 221411
Number of successful extensions: 351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)