Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0185
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14180.2 68414.m01677 expressed protein                             32   0.39 
At1g14180.1 68414.m01676 expressed protein                             32   0.39 
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu...    30   1.6  
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER...    29   2.1  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    29   2.1  
At1g76910.1 68414.m08953 hypothetical protein                          29   2.1  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    29   3.7  
At1g52520.1 68414.m05929 far-red impaired responsive protein, pu...    29   3.7  
At3g29180.1 68416.m03657 expressed protein                             28   6.4  
At5g37340.2 68418.m04485 zinc finger (ZPR1-type) family protein ...    27   8.5  
At5g37340.1 68418.m04484 zinc finger (ZPR1-type) family protein ...    27   8.5  
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s...    27   8.5  
At3g43320.1 68416.m04579 hypothetical protein                          27   8.5  

>At1g14180.2 68414.m01677 expressed protein
          Length = 242

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 379 SSEVGVGDND--RSSSEAATNSSQPT*PXFTGSHNIRNTKRTRASFSVYSSHSPNY*QSI 552
           S  VG+GD++  R+SS      S+P  P    S N+R+T    A    +SS +P+   S+
Sbjct: 48  SRNVGIGDSEPGRNSSSRRFFLSKPVHPILHPSDNVRDTASDSADACSWSSGTPSSIDSV 107


>At1g14180.1 68414.m01676 expressed protein
          Length = 245

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 379 SSEVGVGDND--RSSSEAATNSSQPT*PXFTGSHNIRNTKRTRASFSVYSSHSPNY*QSI 552
           S  VG+GD++  R+SS      S+P  P    S N+R+T    A    +SS +P+   S+
Sbjct: 51  SRNVGIGDSEPGRNSSSRRFFLSKPVHPILHPSDNVRDTASDSADACSWSSGTPSSIDSV 110


>At1g80010.1 68414.m09362 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 696

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 529 YVKNRRKKTHGSVLCCECCGFR 464
           + K   K+  G+VLCC C GF+
Sbjct: 99  WTKRNSKEKRGAVLCCNCQGFK 120


>At5g40630.1 68418.m04932 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 165

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 364 CSAWGSSEVGVGDNDRSSSEAATNSS 441
           C  +G   +G G+N RSSS ++++SS
Sbjct: 10  CIGFGCGRIGTGNNKRSSSSSSSSSS 35


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 346 WGSNCRCSAWGSSEVGV-GDNDRSSSEAATNSS 441
           WG+    +AWGS++  V G +D+ +SE  ++++
Sbjct: 293 WGTESAPAAWGSTDAAVWGSSDKKNSETESDAA 325


>At1g76910.1 68414.m08953 hypothetical protein
          Length = 139

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 283 RRQLRPSTGRLLHSSSCRCNLWGSNCRCSAWGSSEVGVGDNDRSSSEAATNS 438
           RR+ RP   R+LH +    N+    CR S  G SE+G+  +       A NS
Sbjct: 22  RRKPRPVITRMLHWTETVTNI--GRCRVSGRGGSELGMSASGNRWLATAKNS 71


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 262 ENVISDDRFPTSCNNCK 212
           +N IS DRFP S +NCK
Sbjct: 235 QNSISGDRFPVSLSNCK 251


>At1g52520.1 68414.m05929 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 703

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 553 KLTVNN*GYVKNRRKKTHGSVLCCECCGFR 464
           ++ V N  + K R K+ +G+VLCC   GF+
Sbjct: 111 RVRVKN-SWFKRRSKEKYGAVLCCSSQGFK 139


>At3g29180.1 68416.m03657 expressed protein
          Length = 513

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 327 GRVQQSPGRWSQLPPRRTQARLKT 256
           GR +QS G WS++PP   + R +T
Sbjct: 243 GREKQSSGSWSEIPPSTFKLRGET 266


>At5g37340.2 68418.m04485 zinc finger (ZPR1-type) family protein
           contains similarity to zinc-finger protein ZPR1 (Zinc
           finger protein 259) [Mus musculus]  SWISS-PROT:Q62384
          Length = 498

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 379 SSEVGVGDNDRSSSEAATNSSQPT 450
           + E+G+ D D SS++AA  S++PT
Sbjct: 472 NEELGLNDIDTSSADAAYESTEPT 495


>At5g37340.1 68418.m04484 zinc finger (ZPR1-type) family protein
           contains similarity to zinc-finger protein ZPR1 (Zinc
           finger protein 259) [Mus musculus]  SWISS-PROT:Q62384
          Length = 493

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 379 SSEVGVGDNDRSSSEAATNSSQPT 450
           + E+G+ D D SS++AA  S++PT
Sbjct: 467 NEELGLNDIDTSSADAAYESTEPT 490


>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
           similar to SP|P54278 PMS1 protein homolog 2 (DNA
           mismatch repair protein PMS2) {Homo sapiens}; contains
           Pfam profiles PF02518: ATPase, histidine kinase-, DNA
           gyrase B-, and HSP90-like domain protein, PF01119: DNA
           mismatch repair protein, C-terminal domain
          Length = 923

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 150 IDPGDDDLEVNLPDYGED 203
           +D G   +E+NL DYGED
Sbjct: 49  LDAGATSIEINLRDYGED 66


>At3g43320.1 68416.m04579 hypothetical protein
          Length = 510

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 349 GSNCRCSAWGSSEVGVGDNDRSSSEAATNSSQPT 450
           GSN      G S +GVG++  ++SEA+  +S  T
Sbjct: 49  GSNSDSLVLGKSILGVGESQEATSEASRGTSHVT 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,198
Number of Sequences: 28952
Number of extensions: 248575
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)