Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0182
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16430.2 68416.m02088 jacalin lectin family protein similar t...    29   2.1  
At3g16430.1 68416.m02087 jacalin lectin family protein similar t...    29   2.1  
At4g14180.1 68417.m02189 expressed protein ; expression supporte...    29   3.7  
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ...    28   6.4  
At3g30390.1 68416.m03836 amino acid transporter family protein l...    27   8.5  

>At3g16430.2 68416.m02088 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile PF01419 jacalin-like lectin domain
          Length = 296

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 199 NYLYNDQTDNTSYLNLNFSISIPVTRFICNHIGEFIICN*LFYLPTPLV 345
           +Y+ N QT+ T    +  S +IP   F+ NH  E ++   ++Y P  L+
Sbjct: 43  DYVKNGQTEQTPLRGIKGS-TIPTDPFVINHPEEHLVSIEIWYKPDGLI 90


>At3g16430.1 68416.m02087 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile PF01419 jacalin-like lectin domain
          Length = 296

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 199 NYLYNDQTDNTSYLNLNFSISIPVTRFICNHIGEFIICN*LFYLPTPLV 345
           +Y+ N QT+ T    +  S +IP   F+ NH  E ++   ++Y P  L+
Sbjct: 43  DYVKNGQTEQTPLRGIKGS-TIPTDPFVINHPEEHLVSIEIWYKPDGLI 90


>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 104 ICNCYSFIFINTLIKITCHHSPEFTRCQ 187
           + N Y    INT++ + C   P  T+CQ
Sbjct: 901 VSNSYLVSAINTVVDVACSKGPALTQCQ 928


>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1862

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 579  GMFXISIWLIDGIWSF*LPFL 641
            G+F ISIW + G W F  PFL
Sbjct: 1594 GLFTISIWFMVGTWLF-APFL 1613


>At3g30390.1 68416.m03836 amino acid transporter family protein low
           similarity to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 460

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 205 LYNDQTDNTSYLNLNFSISIPVTRFICNH 291
           L  D TD TS+ NL   + + VT FIC++
Sbjct: 231 LLPDVTDLTSFWNLFTVVPVLVTAFICHY 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,774
Number of Sequences: 28952
Number of extensions: 176003
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)