Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0155
(430 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 32 0.19
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro... 31 0.25
At4g00910.1 68417.m00124 expressed protein contains Pfam profile... 30 0.77
At4g02710.1 68417.m00366 kinase interacting family protein simil... 29 1.8
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma... 28 2.3
At2g30530.1 68415.m03718 expressed protein 27 4.1
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 27 4.1
At1g67900.2 68414.m07754 phototropic-responsive NPH3 family prot... 27 4.1
At1g67900.1 68414.m07753 phototropic-responsive NPH3 family prot... 27 4.1
At2g04230.1 68415.m00410 F-box family protein contains F-box dom... 27 5.4
At2g36200.1 68415.m04444 kinesin motor protein-related 27 7.1
At5g64710.2 68418.m08135 expressed protein contains Pfam profile... 26 9.4
At5g64710.1 68418.m08134 expressed protein contains Pfam profile... 26 9.4
At4g39420.1 68417.m05579 expressed protein ; expression support... 26 9.4
At4g11720.1 68417.m01870 hypothetical protein 26 9.4
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 26 9.4
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 31.9 bits (69), Expect = 0.19
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 35 DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 211
D K +K+H CL+ + DE N L+T + K + P+K+ A L K KDGK
Sbjct: 77 DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132
>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
P450, Arabidopsis thaliana; supported by cDNA:
gi_15293092_gb_AY050980.1_
Length = 484
Score = 31.5 bits (68), Expect = 0.25
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 370 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 275
ERA+G S G +SR C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466
>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 497
Score = 29.9 bits (64), Expect = 0.77
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 198 PRTGNSRRTSLWLKCLMLKQIESREA 275
PR+G S+R LWLK L++K I R A
Sbjct: 25 PRSGLSKRIFLWLKDLVMKVIMERVA 50
>At4g02710.1 68417.m00366 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1111
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 391 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 299
DYVFT +E A +S+G+ + L EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811
>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
PF04937: Protein of unknown function (DUF 659)
Length = 433
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 62 HRADCLSETKADEQLVNKLKT-GDFKTENEPLKKYALCMLIKSQLMTKD-GKFKKDVALA 235
H D + E + + K++T GD+K EN L +Y C+L + +D G K + LA
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVLEWCDVCVEDFGPLMKLLRLA 286
Query: 236 KVPN 247
N
Sbjct: 287 DGEN 290
>At2g30530.1 68415.m03718 expressed protein
Length = 371
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -3
Query: 176 AYIEHTSSMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GPEPRXPK 6
+Y +S S S SS+ + + S+ RDS L + SSPS+ P P PK
Sbjct: 34 SYSSSSSPSPSSASSSAASSLAAKAIRASSAHRDSSLSSAYSSPSS---APVPTPPK 87
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
TBP (TATA-binding protein) -interacting protein 120
(TIP120); contains TIGRFAM profile TIGR01612:
reticulocyte binding protein
Length = 1866
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 282 RLPGQQRQQPSPNSLELCEMLPRERPE 362
R P ++R++ +PN+LE LP++ E
Sbjct: 114 RAPAKEREEIAPNTLENVSKLPKQHQE 140
>At1g67900.2 68414.m07754 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 631
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 187 TADDQGREIQEGRRSG*SA*C*SKLKVEKLIDACL 291
+A++ E QE RRS SA SKLKV KL+D L
Sbjct: 384 SAENIDLEFQESRRSS-SASHSSKLKVAKLVDGYL 417
>At1g67900.1 68414.m07753 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 631
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 187 TADDQGREIQEGRRSG*SA*C*SKLKVEKLIDACL 291
+A++ E QE RRS SA SKLKV KL+D L
Sbjct: 384 SAENIDLEFQESRRSS-SASHSSKLKVAKLVDGYL 417
>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
Pfam:PF00646
Length = 448
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 256 KLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 351
KL++ KL D L + +P + WN KC E
Sbjct: 337 KLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 23 QALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPL 154
Q EQ NL A CLS+ Q VNKL + N+ +
Sbjct: 542 QVELSEQISNLFNRVASCLSQQNVHLQGVNKLSQSRLEAHNKAI 585
>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 716
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 11 VXLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 181
V + + K+N K + + ++ ++ V +K D K + EP+K L +
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296
Query: 182 KSQLMTKDGKFKK 220
S KDG KK
Sbjct: 297 VSSFEEKDGFLKK 309
>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 841
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 11 VXLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 181
V + + K+N K + + ++ ++ V +K D K + EP+K L +
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421
Query: 182 KSQLMTKDGKFKK 220
S KDG KK
Sbjct: 422 VSSFEEKDGFLKK 434
>At4g39420.1 68417.m05579 expressed protein ; expression supported
by MPSS
Length = 781
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 85 LGETVGSVFLQVLLLLICEGLS 20
+GE+VG F L L+ C+GLS
Sbjct: 675 IGESVGCSFQGFLFLVTCDGLS 696
>At4g11720.1 68417.m01870 hypothetical protein
Length = 658
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 307 CCLCWPGKRQSASL--LSICFSIRHFSQSDVLLE 212
CC C P +R +S + +CFS F + D +++
Sbjct: 189 CCPCGPQRRMPSSCGDICMCFSFVTFKEFDKMIK 222
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 35 DEQKENLKKHRADCLSETKADEQLVNK 115
DEQ E LKK +A + + K E+LV +
Sbjct: 71 DEQIELLKKDKAKAIDDLKESEKLVEE 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,674
Number of Sequences: 28952
Number of extensions: 179623
Number of successful extensions: 488
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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