Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0140
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    27   8.2  
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    27   8.2  

>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 175 LIKHVIVLREQISQ*EIRPITLHK 104
           LIKH+++LREQI+  +I     HK
Sbjct: 565 LIKHLLILREQIAPFDIEFSVTHK 588


>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 63  SIQMTFRHLHKLNSLCNVIGRISH*DICSRSTITCLIN 176
           +I   F+++  L +LCN++G  S   + S + I C+ N
Sbjct: 70  AISRLFKNMTPLKNLCNILGSCSGLVLLSINGILCVAN 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,359
Number of Sequences: 28952
Number of extensions: 235385
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)