Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0130
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH) domain...    32   0.40 
At1g40125.1 68414.m04763 hypothetical protein member of hypothet...    31   0.93 
At3g30670.1 68416.m03887 hypothetical protein                          30   1.6  
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)...    29   2.8  
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)...    29   2.8  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    28   5.0  

>At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
          Length = 653

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 72  YVADSVSGMASTSKDNMGPVPICPMPP 152
           Y  D + G AS +K N GPVP   MPP
Sbjct: 610 YQRDGMRGQASLAKMNTGPVPAYGMPP 636


>At1g40125.1 68414.m04763 hypothetical protein member of
           hypothetical protein common family
          Length = 168

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 535 HFRAETSGTQSLANVRRQPQQTPPXIYQETIKDSPPSSPGNRT 663
           H+R      Q   +   QPQ+  P   QET +  PP SP  +T
Sbjct: 68  HYRNYPPPQQLFQHSTNQPQRVDPLPPQETAQQDPPLSPDPKT 110


>At3g30670.1 68416.m03887 hypothetical protein
          Length = 133

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 535 HFRAETSGTQSLANVRRQPQQTPPXIYQETIKDSPPSSPGNRT 663
           H+R      Q   +   QPQ+  P   QET +  PP SP   T
Sbjct: 69  HYRNYPPPQQLFQHSTNQPQRVDPLPPQETAQQDPPLSPDPET 111


>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
           contains Pfam profile: PF00249 myb DNA-binding domain
          Length = 520

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 176 CSFLVPDSRRHRAYGNRAHIVFASTGH-PTDTV 81
           CSF VP    H  YGNR   V     H PTD +
Sbjct: 268 CSFSVPCDVEHPLYGNRHSPVMIPDSHTPTDGI 300


>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
           contains Pfam profile: PF00249 myb DNA-binding domain
          Length = 451

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 176 CSFLVPDSRRHRAYGNRAHIVFASTGH-PTDTV 81
           CSF VP    H  YGNR   V     H PTD +
Sbjct: 268 CSFSVPCDVEHPLYGNRHSPVMIPDSHTPTDGI 300


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 119 IVFASTGHPTDTVGNIIKYKGW 54
           IV + T HPT+ +  ++K KGW
Sbjct: 112 IVVSVTKHPTEELKGLVKIKGW 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,313
Number of Sequences: 28952
Number of extensions: 259596
Number of successful extensions: 585
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)