Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0114
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   143   8e-35
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             142   1e-34
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   142   1e-34
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.66 
At5g10730.1 68418.m01243 expressed protein                             28   4.7  
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-...    27   8.2  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  143 bits (347), Expect = 8e-35
 Identities = 72/131 (54%), Positives = 85/131 (64%)
 Frame = +2

Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
             G K +PYL T+DGRTIRYPDPL K        L+  ++        G  V        
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNR 189

Query: 617 GAVGTIVSRER 649
           G VG I +RE+
Sbjct: 190 GRVGVIKNREK 200



 Score =  117 bits (281), Expect = 8e-27
 Identities = 52/68 (76%), Positives = 59/68 (86%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 231 VLKIVKQR 254
           V+ I+ QR
Sbjct: 61  VISILMQR 68


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  142 bits (345), Expect = 1e-34
 Identities = 72/131 (54%), Positives = 85/131 (64%)
 Frame = +2

Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
             G K +PYL T+DGRTIRYPDPL K        L+  ++        G  V        
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189

Query: 617 GAVGTIVSRER 649
           G VG I +RE+
Sbjct: 190 GRVGVIKNREK 200



 Score =  117 bits (281), Expect = 8e-27
 Identities = 52/68 (76%), Positives = 59/68 (86%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 231 VLKIVKQR 254
           V+ I+ QR
Sbjct: 61  VISILMQR 68


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  142 bits (345), Expect = 1e-34
 Identities = 72/131 (54%), Positives = 85/131 (64%)
 Frame = +2

Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
             G K +PYL T+DGRTIRYPDPL K        L+  ++        G  V        
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189

Query: 617 GAVGTIVSRER 649
           G VG I +RE+
Sbjct: 190 GRVGVIKNREK 200



 Score =  117 bits (281), Expect = 8e-27
 Identities = 52/68 (76%), Positives = 59/68 (86%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 231 VLKIVKQR 254
           V+ I+ QR
Sbjct: 61  VISILMQR 68


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 175 KHSRNLWGPVDGLGAYTPPSLSNIHAL 95
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At5g10730.1 68418.m01243 expressed protein
          Length = 287

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 233 PENCETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNE 340
           P N E+ + KV  +  TDP +P G +DV  I++ ++
Sbjct: 249 PVNVES-VAKVAVRAATDPVFPPGIVDVHGIQRYSQ 283


>At1g07510.1 68414.m00804 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 813

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +2

Query: 221 RKRSPENCETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 400
           R R+P+N E  + +VDG +     + A F     +E   +L R   + + R      TP+
Sbjct: 34  RLRAPQNLEAAVNQVDGGLGFLRRHFASFAARKGLE-AGDLSRAFANPRLRRFFSSQTPK 92

Query: 401 EAKYKLCKVKRVATGPKNVPYLVTHDG 481
           +  Y+    K     PKN     + DG
Sbjct: 93  KKNYENYYPKDSKKAPKNEQKSESRDG 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,994
Number of Sequences: 28952
Number of extensions: 316613
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)