Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0048
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33880.1 68414.m04200 avirulence-responsive family protein / ...    30   1.5  
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea...    29   2.0  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    29   3.5  
At3g44940.1 68416.m04842 expressed protein                             28   6.2  
At1g21480.2 68414.m02686 exostosin family protein contains Pfam ...    28   6.2  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   8.2  

>At1g33880.1 68414.m04200 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 234

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 218 VRHEISQMTEELLRFLSRGKLGFQMLKFKH--LFNLTAFIIREKDDYFPICCPAALNAEM 391
           +++ I+Q  E  L  L R   G ++L++    L +   F  +E +DYFP CCP  L   +
Sbjct: 113 MKNRITQEEEYALNTLQR-IFGSKILEYLIFLLIDGEKFEAKEFEDYFPECCPEFLMRVL 171

Query: 392 R 394
           R
Sbjct: 172 R 172


>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
           family protein Similar to U4/U6 small nuclear
           ribonucleoprotein hPrp4  (gi:2708305)[Homo sapiens];
           contains 4  WD-40 repeats
          Length = 276

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 523 ISQVPSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKII 347
           +S VP L    +V     +LKG +  +++ +  S  D  L   S    ++ W TDG ++
Sbjct: 83  LSGVPKLWEVPQVTNKIVVLKGHKEHVTDVVFSSVDDECLATASTDRTEKIWKTDGTLL 141


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 502 RRCNEVWKNKTLLKGSRVIISEFLTKSRHD 413
           R C++  K   L+ G ++I+ E  TKSR+D
Sbjct: 234 RPCDKTRKRWLLMTGDKLILVEMCTKSRYD 263


>At3g44940.1 68416.m04842 expressed protein
          Length = 250

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 325 RSKIEQMFELQHLKTK-FPSAQKAQELLSHL--GNLMTNPRRHQNQRQSEK 182
           R + EQ+  L+ + TK      +A E  +HL   NL+   ++ QNQ Q ++
Sbjct: 45  RKRDEQLIHLEDVLTKTLKERDEALEKYNHLLLNNLLLQQKQQQNQNQKQE 95


>At1g21480.2 68414.m02686 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 410

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 346 VLLPDNKRSKIEQMFELQHLKTKFPSAQKAQELLSHLGNLMTNPRRHQNQ 197
           VLL D+     + + +   +  K+PS +   E L +L ++  N +  QN+
Sbjct: 346 VLLSDHAELPFQNVIDYAQVSIKWPSTRIGSEFLDYLASISGNIKLLQNR 395


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 433 LTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDN 329
           L +S+  +FLE   HF   R     GK+ +L+ +N
Sbjct: 79  LLESQESLFLEENGHFSNARGSHNSGKLCILIREN 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,919
Number of Sequences: 28952
Number of extensions: 309999
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)