Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c20
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    28   3.6  
At5g49020.2 68418.m06066 protein arginine N-methyltransferase fa...    28   4.7  
At5g49020.1 68418.m06065 protein arginine N-methyltransferase fa...    28   4.7  
At5g63720.1 68418.m07998 hypothetical protein                          27   6.2  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    27   6.2  

>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
           domain-containing protein / HNH endonuclease
           domain-containing protein similar to HepA-related
           protein HARP [Homo sapiens] GI:6693791; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain, PF01844: HNH
           endonuclease
          Length = 1190

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 181 GKWNSCKPENLDEERLKAVVQYL 249
           GKW  C PE+  EE+++ +++ L
Sbjct: 174 GKWQPCLPEHYTEEKVEQLIETL 196


>At5g49020.2 68418.m06066 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 526

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 218 SSKFSGLQLFHL-PSGFICTINGAVILRASKPGFSKGTLASF 96
           S   S  QLF L P  F C  +G++     K  FS+G +  F
Sbjct: 57  SFDLSSTQLFKLGPLQFTCVSDGSISSAKEKSSFSRGVVIKF 98


>At5g49020.1 68418.m06065 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 528

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 218 SSKFSGLQLFHL-PSGFICTINGAVILRASKPGFSKGTLASF 96
           S   S  QLF L P  F C  +G++     K  FS+G +  F
Sbjct: 57  SFDLSSTQLFKLGPLQFTCVSDGSISSAKEKSSFSRGVVIKF 98


>At5g63720.1 68418.m07998 hypothetical protein 
          Length = 492

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 182 PSGFICTINGAVILRASKPGFSKGTL 105
           P   +  ING+ I R SKP  +KGTL
Sbjct: 90  PPAMLSQINGSHITRVSKPLEAKGTL 115


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 97   KLASVPLEKPGFDALNMTAPFMVQMNPDGKWNSCKPENLDEERLK 231
            K+  + L     D LN TA   V++N +    S + +NLDEE+LK
Sbjct: 1502 KILEISLNNVSSDDLNRTAS--VELNEEISNISKQIQNLDEEKLK 1544


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,262,771
Number of Sequences: 28952
Number of extensions: 149816
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)