Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c05
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11990.1 68418.m01402 proline-rich family protein contains pr...    32   0.23 
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    31   0.53 
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida...    29   1.6  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   1.6  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    28   3.7  
At5g49950.1 68418.m06185 embryogenesis-associated protein-relate...    27   6.5  
At5g36050.1 68418.m04343 hypothetical protein includes At2g10370...    27   6.5  
At4g19300.1 68417.m02844 hypothetical protein includes At2g10370...    27   6.5  
At3g50090.1 68416.m05476 exonuclease family protein contains exo...    27   6.5  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    27   6.5  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    27   6.5  
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    27   8.6  
At4g27110.1 68417.m03896 phytochelatin synthetase-related contai...    27   8.6  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    27   8.6  

>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 74  CPPVCSPPDCRP---ICGPASPLLCQSSVPP 157
           CP +CSPP  +P   +  P SP L  SS PP
Sbjct: 38  CPTICSPPPSKPSPSMSPPPSPSLPLSSSPP 68


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
           carteri f. nagariensis GP|6523547; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 193
           YCPP   PP C  IC P  P       PPT   +   P  N
Sbjct: 29  YCPP---PPPCICICNPGPPPPQPDPQPPTPPTFQPAPPAN 66


>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
           family protein similar to  laccase [Pinus
           taeda][GI:13661197]
          Length = 565

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +3

Query: 96  RIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSEFKNVLQVSF 275
           R ++ +V ++LR   + +C   NG+ L    +  + VT    + +  +Y   K V    F
Sbjct: 350 RRIITTVSINLRMCPQNSCEGPNGSRLAASMNNISFVTPSHVDILKAYYYHIKGVYGTRF 409

Query: 276 PE 281
           PE
Sbjct: 410 PE 411


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +2

Query: 71  YCPPVCSPP--DCRPICGPASP 130
           +CP  C      C+PICGP SP
Sbjct: 35  FCPDSCHVECASCKPICGPPSP 56


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 77  PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 184
           PPV SPP   P+  P  P     S PP    +  +P
Sbjct: 431 PPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSSP 466


>At5g49950.1 68418.m06185 embryogenesis-associated protein-related
           contains weak similarity to Embryogenesis-associated
           protein EMB8 (Swiss-Prot:Q40863) [Picea glauca]
          Length = 537

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 175 CKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQMGFLFK 303
           CK +    +LLH  Y   + +S  +L+ ++  LF K   F +K
Sbjct: 66  CKFIVSKCRLLHGRYFPTFWLSSPHLQTAFLTLFGKSPPFSYK 108


>At5g36050.1 68418.m04343 hypothetical protein includes At2g10370,
           At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
           At3g43040, At3g42500
          Length = 252

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 187 HQHIQLLHSNYVTQWTISIVNLKMSYKFLFP 279
           H H+  L S  VT WTI ++ L++  KFL P
Sbjct: 4   HHHLYEL-SPMVTGWTICVMVLRIYKKFLNP 33


>At4g19300.1 68417.m02844 hypothetical protein includes At2g10370,
           At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
           At3g43040, At3g42500
          Length = 252

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 187 HQHIQLLHSNYVTQWTISIVNLKMSYKFLFP 279
           H H+  L S  VT WTI ++ L++  KFL P
Sbjct: 4   HHHLYEL-SPMVTGWTICVMVLRIYKKFLNP 33


>At3g50090.1 68416.m05476 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 322

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 139 PEQRATNTTVLSCKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQM 288
           PEQR      L+ ++   ++  L  +Y   W +S V +KMS   + P QM
Sbjct: 30  PEQRLVR---LTNENPQYNVDFLFHSYSKDWFVSDVGMKMS-NVMIPNQM 75


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 77  PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 202
           PPV SPP   PI  P  P +   S PP    Y   P   +YS
Sbjct: 496 PPVHSPPPPSPIHSPPPPPV--YSPPPPPPVYSPPPPPPVYS 535



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 77  PPVCSPPDCRPICGPASPLLCQSSVPP 157
           PPV SPP   P+  P  P    S  PP
Sbjct: 522 PPVYSPPPPPPVYSPPPPPPVHSPPPP 548


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 77  PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCI 190
           PPV S P   P    ++P L + S PP     P  P I
Sbjct: 33  PPVDSSPPSPPADSSSTPPLSEPSTPPPDSQLPPLPSI 70


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1102

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 261 LQVSFPETDGFSFQDIVFIT 320
           L + FP  +GF+FQD+V  T
Sbjct: 782 LDIYFPPKEGFTFQDLVAAT 801


>At4g27110.1 68417.m03896 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 668

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 209 CNSCIC*CKDLQDSTVVLVAR 147
           CN+C C CKD+   T    AR
Sbjct: 438 CNTCACGCKDIDTDTCNANAR 458


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 77  PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 193
           PPV SPP   PI  P  P+      P T      +P  N
Sbjct: 797 PPVHSPPPPSPIYSPPPPVFSPPPKPVTPLPPATSPMAN 835


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,352
Number of Sequences: 28952
Number of extensions: 188141
Number of successful extensions: 560
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)