Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c03
(546 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 228 2e-60
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 228 2e-60
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 149 2e-36
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 149 2e-36
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 149 2e-36
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 149 2e-36
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 149 2e-36
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 149 2e-36
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 149 2e-36
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 149 2e-36
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 149 2e-36
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 149 2e-36
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 149 2e-36
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 149 2e-36
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 147 4e-36
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 147 4e-36
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 147 4e-36
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 147 4e-36
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 147 4e-36
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 147 4e-36
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 147 4e-36
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 147 5e-36
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 135 2e-32
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 111 4e-25
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 94 5e-20
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 67 8e-12
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 66 1e-11
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 62 3e-10
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 57 7e-09
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 57 7e-09
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 53 1e-07
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 52 2e-07
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 51 6e-07
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 50 8e-07
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 50 8e-07
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 50 8e-07
At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquiti... 48 4e-06
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER... 48 4e-06
At3g06455.1 68416.m00747 splicing factor-related contains weak s... 47 7e-06
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 46 2e-05
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 46 2e-05
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 45 4e-05
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 45 4e-05
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 45 4e-05
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 45 4e-05
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa... 44 7e-05
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 42 2e-04
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 41 6e-04
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 40 8e-04
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 40 0.001
At1g53980.1 68414.m06149 polyubiquitin-related contains similari... 40 0.001
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 37 0.010
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 37 0.010
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER... 35 0.031
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 35 0.041
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 35 0.041
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 34 0.054
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 34 0.071
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 32 0.29
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 31 0.38
At2g19180.1 68415.m02238 expressed protein 27 6.2
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi... 27 6.2
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 27 8.2
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 228 bits (558), Expect = 2e-60
Identities = 107/123 (86%), Positives = 113/123 (91%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGGXIEPSLRILAMKYXCEKMICRKCYARLHPRATNCRKTKCGHTNN 425
IQKESTLHLVLRLRGG IEPSL +LA KY +KMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
Query: 426 LRP 434
LRP
Sbjct: 121 LRP 123
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 228 bits (558), Expect = 2e-60
Identities = 107/123 (86%), Positives = 113/123 (91%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGGXIEPSLRILAMKYXCEKMICRKCYARLHPRATNCRKTKCGHTNN 425
IQKESTLHLVLRLRGG IEPSL +LA KY +KMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
Query: 426 LRP 434
LRP
Sbjct: 121 LRP 123
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 66.1 bits (154), Expect = 1e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKE 167
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKE
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 145 KLXSKTRKVFLQTNNVSSLPGNNXKMAALFQTITSRKNPHFTW 273
K + ++VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 255 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 297
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 66.1 bits (154), Expect = 1e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKE 167
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKE
Sbjct: 367 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 145 KLXSKTRKVFLQTNNVSSLPGNNXKMAALFQTITSRKNPHFTW 273
K + ++VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 407 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 449
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 66.1 bits (154), Expect = 1e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKE 167
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKE
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 145 KLXSKTRKVFLQTNNVSSLPGNNXKMAALFQTITSRKNPHFTW 273
K + ++VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 331 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 373
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 66.1 bits (154), Expect = 1e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKE 167
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKE
Sbjct: 367 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 145 KLXSKTRKVFLQTNNVSSLPGNNXKMAALFQTITSRKNPHFTW 273
K + ++VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 407 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 449
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 66.1 bits (154), Expect = 1e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKE 167
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKE
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 35.5 bits (78), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 145 KLXSKTRKVFLQTNNVSSLPGNNXKMAALFQTITSRKNPHFTW 273
K + ++VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 331 KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 373
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 2e-36
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 98.3 bits (234), Expect = 3e-21
Identities = 48/92 (52%), Positives = 64/92 (69%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ I VKTLTGK I +++E +DTI+ +K +++KEGIPP QQRLI+A
Sbjct: 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGGXI 299
GKQL D +T DY I+ S LHLVL LRGG +
Sbjct: 123 GKQLADDKTAKDYAIEGGSVLHLVLALRGGLL 154
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 145 bits (352), Expect = 1e-35
Identities = 73/90 (81%), Positives = 79/90 (87%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKE IPPDQQRLIFA
Sbjct: 138 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFA 197
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 198 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 227
Score = 141 bits (342), Expect = 2e-34
Identities = 73/90 (81%), Positives = 79/90 (87%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+D NIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLAD-NIQKESTLHLVLRLRGG 151
Score = 98.3 bits (234), Expect = 3e-21
Identities = 50/67 (74%), Positives = 55/67 (82%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+S TI+NVKA IQDKEGIPPDQQRLIFA
Sbjct: 214 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFA 273
Query: 204 GKQLXDG 224
GKQL G
Sbjct: 274 GKQLEGG 280
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 147 bits (357), Expect = 4e-36
Identities = 71/80 (88%), Positives = 75/80 (93%)
Frame = +3
Query: 54 FSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTL 233
F MQIFVKTLTGKTITLEVE+SDTI+N+KA IQDKEGIPPDQQRLIFAGKQL DGRTL
Sbjct: 73 FRGGMQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
Query: 234 SDYNIQKESTLHLVLRLRGG 293
+DYNIQKESTLHLVLRLRGG
Sbjct: 133 ADYNIQKESTLHLVLRLRGG 152
Score = 142 bits (345), Expect = 1e-34
Identities = 72/90 (80%), Positives = 78/90 (86%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGI PDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQ DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQHEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 130 bits (314), Expect = 6e-31
Identities = 61/76 (80%), Positives = 69/76 (90%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIF+KTLTGKT LEVE+SDTI+NVKA IQD EGIPPDQ RLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
+Q++STLHL+LR RGG
Sbjct: 61 VQEDSTLHLLLRFRGG 76
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 101 bits (241), Expect = 4e-22
Identities = 49/90 (54%), Positives = 64/90 (71%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ I VKTLTGK I +++E +DTI+ +K +++KEGIPP QQRLI+A
Sbjct: 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL D +T DYNI+ S LHLVL LRGG
Sbjct: 123 GKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 147 bits (357), Expect = 4e-36
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEGIPPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 147 bits (356), Expect = 5e-36
Identities = 70/76 (92%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVKA IQDKEG+PPDQQRLIFAGKQL DGRTL+DYN
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYN 138
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 139 IQKESTLHLVLRLRGG 154
Score = 137 bits (331), Expect = 5e-33
Identities = 69/90 (76%), Positives = 76/90 (84%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFV+TLT KTI LEVE+SDT +NVKA IQDKEGIPPDQQRLIFA
Sbjct: 141 KESTLHLVLRLRGGMQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFA 200
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRL GG
Sbjct: 201 GKQLEDGRTLADYNIQKESTLHLVLRLCGG 230
Score = 131 bits (317), Expect = 3e-31
Identities = 69/91 (75%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFV TLTGKTITLEVE+SDTI+NVKA IQDKE I PDQQRLIFA
Sbjct: 217 KESTLHLVLRLCGGMQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFA 276
Query: 204 GKQLXDG-RTLSDYNIQKESTLHLVLRLRGG 293
G+QL DG TL+DYNIQKESTLHLVLRLRGG
Sbjct: 277 GEQLEDGYYTLADYNIQKESTLHLVLRLRGG 307
Score = 116 bits (279), Expect = 1e-26
Identities = 57/77 (74%), Positives = 65/77 (84%)
Frame = +3
Query: 63 TMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDY 242
+MQI KTLT KTIT++V +SDTI NVKA IQD EGIP DQQRLIF+GK L DGRTL+DY
Sbjct: 2 SMQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADY 61
Query: 243 NIQKESTLHLVLRLRGG 293
+IQK+S LHL LRLRGG
Sbjct: 62 SIQKDSILHLALRLRGG 78
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 135 bits (326), Expect = 2e-32
Identities = 69/90 (76%), Positives = 77/90 (85%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFV+TLTGKTITLEV++SDTI+NVKA IQDKEGI P QQRLIFA
Sbjct: 65 KESTLHLVLRLRGGMQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFA 124
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTL+DYNIQKESTLHLVLRL GG
Sbjct: 125 GKQLEDGRTLADYNIQKESTLHLVLRLCGG 154
Score = 129 bits (311), Expect = 1e-30
Identities = 63/77 (81%), Positives = 69/77 (89%)
Frame = +3
Query: 63 TMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDY 242
T+QI+ KTLT KTITL+VE SD+I NVKA IQ+KEGIP DQQRLIFAGKQL DG TL+DY
Sbjct: 2 TIQIYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADY 61
Query: 243 NIQKESTLHLVLRLRGG 293
NIQKESTLHLVLRLRGG
Sbjct: 62 NIQKESTLHLVLRLRGG 78
Score = 111 bits (268), Expect = 2e-25
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIF+KTLTGKTI LEVE+SDTI NVK IQ KEGI PDQQ LIF G+QL DG TL DY+
Sbjct: 552 MQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYD 611
Query: 246 IQKESTLHLVLRLR 287
I K+STL+LVLRLR
Sbjct: 612 IHKKSTLYLVLRLR 625
Score = 107 bits (258), Expect = 4e-24
Identities = 59/90 (65%), Positives = 68/90 (75%), Gaps = 2/90 (2%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGI--PPDQQRLI 197
K S + V F MQIFVKTLT K I LEVE+ DTIENVKA +QDKEGI P+ QRLI
Sbjct: 305 KGSTLYLVTRFRCGMQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLI 364
Query: 198 FAGKQLXDGRTLSDYNIQKESTLHLVLRLR 287
F GK+L DG TL+DY+IQKESTLHLVL ++
Sbjct: 365 FLGKELKDGCTLADYSIQKESTLHLVLGMQ 394
Score = 105 bits (251), Expect = 3e-23
Identities = 52/76 (68%), Positives = 58/76 (76%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVK GK ITLEV +SDTI++VKA IQDK G PPDQQ L+F G QL DGRTL DYN
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 246 IQKESTLHLVLRLRGG 293
I+ ESTLHL +R G
Sbjct: 453 IRNESTLHLFFHIRHG 468
Score = 97.9 bits (233), Expect = 4e-21
Identities = 55/96 (57%), Positives = 68/96 (70%), Gaps = 7/96 (7%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGK-----TITLEVEASDTIENVKAXIQDKEGIPPDQQ 188
K+S + V+ MQIFV T +GK T+TL+VE+SDTIENVKA IQD+EG+ PD Q
Sbjct: 141 KESTLHLVLRLCGGMQIFVSTFSGKNFTSDTLTLKVESSDTIENVKAKIQDREGLRPDHQ 200
Query: 189 RLIFAGKQL--XDGRTLSDYNIQKESTLHLVLRLRG 290
RLIF G++L D RTL+DY I+ STL L LRLRG
Sbjct: 201 RLIFHGEELFTEDNRTLADYGIRNRSTLCLALRLRG 236
Score = 95.1 bits (226), Expect = 3e-20
Identities = 52/81 (64%), Positives = 58/81 (71%), Gaps = 5/81 (6%)
Frame = +3
Query: 66 MQIFVKTL-----TGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRT 230
M IFVK L TG+ LEVE+SDTI+NVKA +QDKE IP D RLIFAGK L GRT
Sbjct: 238 MYIFVKNLPYNSFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRT 297
Query: 231 LSDYNIQKESTLHLVLRLRGG 293
L+ YNIQK STL+LV R R G
Sbjct: 298 LAHYNIQKGSTLYLVTRFRCG 318
Score = 94.3 bits (224), Expect = 5e-20
Identities = 52/83 (62%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Frame = +3
Query: 66 MQIFVKTL-------TGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDG 224
MQIFVKT T KTITLEVE+SDTI+NVK IQ K GIP D+QRLIF G+ L
Sbjct: 469 MQIFVKTFSFSGETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGS 528
Query: 225 RTLSDYNIQKESTLHLVLRLRGG 293
RTL DYNIQK ST+H + RGG
Sbjct: 529 RTLLDYNIQKGSTIHQLFLQRGG 551
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 111 bits (266), Expect = 4e-25
Identities = 53/73 (72%), Positives = 60/73 (82%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
M IF+KTLTG+ I LEVE DTIEN+KA IQDK+GIP DQQRLIF GKQL DG TL+DYN
Sbjct: 86 MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYN 145
Query: 246 IQKESTLHLVLRL 284
IQ +S LHL+ RL
Sbjct: 146 IQNDSILHLIKRL 158
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 94.3 bits (224), Expect = 5e-20
Identities = 43/76 (56%), Positives = 56/76 (73%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
M+I VKTLT K I +E+E +DTIE +K I++KEGIPP QR+++ GKQL D T YN
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 246 IQKESTLHLVLRLRGG 293
+++ S LHLVL LRGG
Sbjct: 61 LERGSVLHLVLALRGG 76
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 66.9 bits (156), Expect = 8e-12
Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGK------------ 209
M IF+KTLTG+T T EV+ SDTI +KA ++KEGIP +QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGRISIKTVKGKSIN 109
Query: 210 -QLXDGRTLSDYNIQKESTLHLVLRL 284
++ D D I E T LVLRL
Sbjct: 110 LEVADSSDTIDLKINGEPTRQLVLRL 135
Score = 65.7 bits (153), Expect = 2e-11
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
M+IFV T+ KT LEV+ SDTI+ +K+ I D+ G P DQQ L G +L + T+SDYN
Sbjct: 141 MRIFVSTIKEKTFILEVKGSDTIKKLKSMIHDQGGPPVDQQDLNHLGTKLKNNATISDYN 200
Query: 246 IQKESTL 266
I+ ++ L
Sbjct: 201 IKPDANL 207
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVE-ASDTIE 137
M I +KTL GK I LEVE +S+TI+
Sbjct: 1 MHISIKTLEGKRIKLEVEDSSNTID 25
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/74 (39%), Positives = 48/74 (64%)
Frame = +3
Query: 60 NTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSD 239
+T+++ +KTL +T T +V ++T+ K I + G+P QQRLIF G+ L D LS+
Sbjct: 22 STLELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSE 81
Query: 240 YNIQKESTLHLVLR 281
Y+++ TLHL++R
Sbjct: 82 YHLENGHTLHLIVR 95
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 61.7 bits (143), Expect = 3e-10
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +3
Query: 57 SNTMQIFVKTLTG-KTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTL 233
S +QIFV+ ++G KTI + E DT+E + I+ K IP +QR+I+ GKQL +L
Sbjct: 92 STRLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSL 151
Query: 234 SDYNIQKESTLHLVLRLR 287
+ Y+I+++++L LV R++
Sbjct: 152 TYYSIEQDASLQLVARMQ 169
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 57.2 bits (132), Expect = 7e-09
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +3
Query: 51 YFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRT 230
Y +T+ I++ TL G I + V SD+IE+VK IQ G Q+L+F G++L +
Sbjct: 30 YPDDTIMIYL-TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNS 88
Query: 231 -LSDYNIQKESTLHLVLRLRGGXIEPSLRILAMKYXCEKMICR 356
+ DY + + + LHLVL+L L++L +K C K CR
Sbjct: 89 NMRDYGVSEGNILHLVLKL------SDLQVLDVKTTCGKH-CR 124
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +3
Query: 36 ILRVVYFSNTMQIF-VKTLTGKTITLEVEASDTIENVKAXIQDKEG--IPPDQQRLIFAG 206
IL +V + +Q+ VKT GK VE I VK I K G + PD+Q +++ G
Sbjct: 100 ILHLVLKLSDLQVLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEG 159
Query: 207 KQLXDGRTLSDYNIQKESTLHLVLR 281
++L D ++D +S LHL++R
Sbjct: 160 EKLEDQSLINDICRNDDSVLHLLVR 184
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 57.2 bits (132), Expect = 7e-09
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +3
Query: 51 YFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRT 230
Y +T+ I++ TL G I + V SD+IE+VK IQ G Q+L+F G++L +
Sbjct: 30 YPDDTIMIYL-TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNS 88
Query: 231 -LSDYNIQKESTLHLVLRLRGGXIEPSLRILAMKYXCEKMICR 356
+ DY + + + LHLVL+L L++L +K C K CR
Sbjct: 89 NMRDYGVSEGNILHLVLKL------SDLQVLDVKTTCGKH-CR 124
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +3
Query: 36 ILRVVYFSNTMQIF-VKTLTGKTITLEVEASDTIENVKAXIQDKEG--IPPDQQRLIFAG 206
IL +V + +Q+ VKT GK VE I VK I K G + PD+Q +++ G
Sbjct: 100 ILHLVLKLSDLQVLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEG 159
Query: 207 KQLXDGRTLSDYNIQKESTLHLVLR 281
++L D ++D +S LHL++R
Sbjct: 160 EKLEDQSLINDICRNDDSVLHLLVR 184
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 52.8 bits (121), Expect = 1e-07
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 57 SNTMQIFVKTLTGKTITLEVEASDTI-ENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTL 233
S +Q FV+ L GK++TL + E +K I ++ IP QRLI G Q+ DG +
Sbjct: 6 SKPLQFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQISDGSAI 65
Query: 234 SDYNIQKESTLHLVLRLRGG 293
S Q ++T++LVL LRGG
Sbjct: 66 S----QPDATVNLVLSLRGG 81
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEG--IPPDQQRLIFAGKQLXDGRTLSD 239
M+IFVKTL+G +EV+ +D + +VK I+ +G P +Q LI GK L D TL +
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 240 YNIQKESTLHLVL 278
N+ + S + ++L
Sbjct: 61 NNVVENSFIVIML 73
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +3
Query: 78 VKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKE 257
++ G +++ T+E+ K + +P +QQRLI+ G+ L D +TL Y +Q +
Sbjct: 22 IRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 258 STLHLV 275
T+H+V
Sbjct: 82 HTIHMV 87
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 50.4 bits (115), Expect = 8e-07
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +3
Query: 54 FSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQ-RLIFAGKQLXDGRT 230
F++ ++I +K L T TL VE + + ++K I G+ P++Q RL+F G+ L + +
Sbjct: 7 FTDLIRIKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQR 66
Query: 231 LSDYNIQKESTLHLV 275
LSDY++++ TL+LV
Sbjct: 67 LSDYHVEEGHTLYLV 81
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 50.4 bits (115), Expect = 8e-07
Identities = 22/71 (30%), Positives = 45/71 (63%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
M+I V T + ITL+V++ +T+ENVKA ++ + +P QQ+L++ G ++ + LS
Sbjct: 1 MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60
Query: 246 IQKESTLHLVL 278
++ + L +++
Sbjct: 61 VKDDDLLMMMV 71
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 50.4 bits (115), Expect = 8e-07
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +3
Query: 78 VKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKE 257
V+ G ++ T+E+ K I +P +QQRLI+ G+ L D +TL Y +Q +
Sbjct: 22 VRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 258 STLHLV 275
T+H+V
Sbjct: 82 HTVHMV 87
>At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquitin
SP:P42740 from [Aglaothamnion neglectum]
Length = 79
Score = 48.0 bits (109), Expect = 4e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGK---QLXDGRTLS 236
MQ+F+ GK +EVE + TI ++K I D G+ Q L GK ++ G T+
Sbjct: 1 MQVFIIDEDGKKYCVEVEKTTTIADMKTKIYDATGMENAYQYLEHRGKIVLEVHGGTTMD 60
Query: 237 DYNIQKESTLHLVLRLRGG 293
DY I+ H+ R+RGG
Sbjct: 61 DYKIKACDIFHMSDRMRGG 79
>At1g64470.1 68414.m07309 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 213
Score = 48.0 bits (109), Expect = 4e-06
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 51 YFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLX-DGR 227
Y ++ +F+ +++G T+ + + SD+I VK IQ G +Q+L+F+G++L +
Sbjct: 30 YSVKSVLVFL-SVSGSTMPMLILESDSIAEVKLRIQTCNGFRVRRQKLVFSGRELARNAS 88
Query: 228 TLSDYNIQKESTLHLVLRL 284
+ DY + S LHLVL+L
Sbjct: 89 RVKDYGVTGGSVLHLVLKL 107
>At3g06455.1 68416.m00747 splicing factor-related contains weak
similarity to Swiss-Prot:Q12874 splicing factor 3A
subunit 3 (Spliceosome associated protein 61, SAP 61,
SF3a60) [Homo sapiens]
Length = 366
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTI-ENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDY 242
+Q FV+ L GK++TL + E +K I ++ IP QRLI G Q+ +S
Sbjct: 9 LQFFVRLLDGKSVTLTFSSPIACGEQIKQRIFEQTKIPTHLQRLISGGFQIPGASAIS-- 66
Query: 243 NIQKESTLHLVLRLRGG 293
Q ++T++LVL LRGG
Sbjct: 67 --QSDTTMNLVLSLRGG 81
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEG---IPPDQQRLIFAGKQLXDGRTLS 236
M+IFVKTL G +EV+ D++ +VK I+ +G P +Q LI GK L D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 237 DYNIQKESTLHLVL 278
+ + + S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEG---IPPDQQRLIFAGKQLXDGRTLS 236
M+IFVKTL G +EV+ D++ +VK I+ +G P +Q LI GK L D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 237 DYNIQKESTLHLVL 278
+ + + S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEG---IPPDQQRLIFAGKQLXDGRTLS 236
M++ VKTL G + V SDTI VK I+D +G P QQ LI GK L D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 237 DYNIQKESTLHLVL 278
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEG---IPPDQQRLIFAGKQLXDGRTLS 236
M++ VKTL G + V SDTI VK I+D +G P QQ LI GK L D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 237 DYNIQKESTLHLVL 278
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEG---IPPDQQRLIFAGKQLXDGRTLS 236
M++ VKTL G + V SDTI VK I+D +G P QQ LI GK L D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 237 DYNIQKESTLHLVL 278
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQD---KEGIPPDQQRLIFAGKQLXDGRTLS 236
M++ VKTL G + V +DTI VK I+D K+ P QQ LI GK L D TL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 237 DYNIQKESTLHLVL 278
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain, Pfam profile
PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 574
Score = 44.0 bits (99), Expect = 7e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +3
Query: 45 VVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKE---GIPPDQQRLIFAGKQL 215
V+ S+ I V+T+ GK L VE S + VK I KE GIP D + L G++L
Sbjct: 102 VIRLSDLQAISVRTVDGKEFELVVERSRNVGYVKQQIASKEKELGIPRDHE-LTLDGEEL 160
Query: 216 XDGRTLSDYNIQKESTLHLVL 278
D R ++D ++ +HL++
Sbjct: 161 DDQRLITDLCQNGDNVIHLLI 181
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 84 TLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLX-DGRTLSDYNIQKES 260
T+ G I V SD+I +VK IQ +G +Q+L++ G+++ + + DY +
Sbjct: 38 TIAGSVIPKRVMESDSIASVKLRIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGK 97
Query: 261 TLHLVLRL 284
LHLV+RL
Sbjct: 98 LLHLVIRL 105
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 63 TMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQ-RLIFAGKQLXDGRTLSD 239
+M+I VK+L GK L V +++ +++A K + ++ + GK+L D ++L+
Sbjct: 660 SMKIIVKSLGGKGSKLHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAA 719
Query: 240 YNIQKESTLHLV 275
N+Q S +HL+
Sbjct: 720 QNVQPNSLVHLI 731
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 63 TMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQ-RLIFAGKQLXDGRTLSD 239
TM+I + L GK L V +++ ++KA K + ++ + GK+L D ++L++
Sbjct: 499 TMKIKLSNLGGKGSLLTVGREESVSSLKAKASRKLDFKETEAVKMFYMGKELEDEKSLAE 558
Query: 240 YNIQKESTLHLV 275
N+Q S +HL+
Sbjct: 559 QNVQPNSLVHLL 570
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
M +F +T +G T +E+ DT+ +K I+ + IP +Q L+F G L D +
Sbjct: 1 MDVFFETRSGSTFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCV 60
Query: 246 IQKESTLHL 272
I S + L
Sbjct: 61 ILNHSRIQL 69
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/72 (31%), Positives = 41/72 (56%)
Frame = +3
Query: 60 NTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSD 239
+T+++ VK GK+I L V T++++K+ +Q + P Q+LIF GK L + TL
Sbjct: 534 STIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQ 592
Query: 240 YNIQKESTLHLV 275
++ + L L+
Sbjct: 593 SDVGSGAKLMLM 604
>At1g53980.1 68414.m06149 polyubiquitin-related contains similarity
to polyubiquitin GI:166336 from (Aglaothamnion
neglectum)
Length = 91
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPP 179
M IFV TL GKT LEV+ S+ I+ VK I D+ +PP
Sbjct: 49 MSIFVSTLKGKTFNLEVKGSEIIQQVKNMIHDQ--VPP 84
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVE-ASDTIE 137
M+I +KT GKTI LE+E +S+TI+
Sbjct: 1 MKILIKTEKGKTINLELEDSSETID 25
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
+++ ++ +G + T++V DT+ +K I+ +G P +Q LIF K L D +
Sbjct: 2 IKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 61
Query: 246 IQKESTLHL 272
I+ S + L
Sbjct: 62 IRHNSRILL 70
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 36.7 bits (81), Expect = 0.010
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 48 VYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGR 227
V + + ++ +G + T++V DT+ +K I+ +G P +Q LIF K L D
Sbjct: 30 VSIDTMISVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHL 89
Query: 228 TLSDYNIQKESTLHL 272
+ I+ S + L
Sbjct: 90 NMFGCQIRHNSRILL 104
>At4g05250.1 68417.m00793 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 35.1 bits (77), Expect = 0.031
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXD 221
M +F +T +G +E+ DT+ +K I+ + IP +Q LIF G L D
Sbjct: 1 MDVFFETQSGDKFEIELGYWDTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQD 52
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAG 206
M+ V+ L G + +EVE +DT+ VK I+ + +P +Q LI G
Sbjct: 1 MKFVVEILGGSSFEIEVERTDTLLVVKQKIEKSQRVPVSKQTLIVDG 47
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 34.7 bits (76), Expect = 0.041
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAG 206
M+ V+ L G + LEV+ DT+ VK I+ + IP +Q LI G
Sbjct: 1 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDG 47
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 34.3 bits (75), Expect = 0.054
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 108 LEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXD 221
L +EA+ T +K + G+ P QQRL+F GK+ D
Sbjct: 83 LSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKERED 120
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 33.9 bits (74), Expect = 0.071
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 93 GKTITLEVEA-SDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLH 269
G+ + + V++ S+ + ++K I + IP ++Q+L L D +L+ YN+ L
Sbjct: 715 GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILT 774
Query: 270 LVLRLRGG 293
L LR RGG
Sbjct: 775 LSLRERGG 782
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 78 VKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXD 221
V T++ + + ++A+ T +K I GI +QRL+F GK+ D
Sbjct: 83 VSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKERED 130
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 31.5 bits (68), Expect = 0.38
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +3
Query: 108 LEVEASD-TIENVKAXIQDKEGIPPDQQRLIFAGKQLXDG----RTLSDYNIQKESTL 266
LEVE + T+ ++ + + G+ P+ +LIFAGK L D TLS I++ S +
Sbjct: 14 LEVELENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIKENSKI 71
>At2g19180.1 68415.m02238 expressed protein
Length = 179
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 483 YNKFPIWLLFNP*SSFWV 430
+N P WL F P SSFWV
Sbjct: 73 HNSTPDWLPFAPGSSFWV 90
>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
protein low similarity to post-transcriptional control
of chloroplast gene expression CRP1 [Zea mays]
GI:3289002; contains Pfam profile PF01535: PPR repeat
Length = 855
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +3
Query: 123 SDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSD---YNIQKESTLHLVLRLRGG 293
+D++ + A I++ G+P Q + AG + + LSD Y I +V +
Sbjct: 106 ADSVNHASAIIKEDVGVPIGDQ-IFKAG--IGNVNLLSDIANYKIPLSDGTEVVGLPKSC 162
Query: 294 XIEPSLRILAMKYXCEKMICRKCYARLHPRATN 392
++P+ I +K K+I R+ A+++PR+ +
Sbjct: 163 MVDPTRPISGVKSSNVKVIRREHLAKVYPRSAD 195
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 87 LTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDG 224
+TG T E DTI K ++ G P + ++F+G DG
Sbjct: 323 VTGMRTTKEARIGDTIYRTKTTVEPLPGFKP-VRHMVFSGVYPADG 367
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,400
Number of Sequences: 28952
Number of extensions: 227745
Number of successful extensions: 741
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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