Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b22
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 30 1.3
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 30 1.7
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,... 28 6.9
At1g21620.1 68414.m02706 pumilio/Puf RNA-binding domain-containi... 28 6.9
At5g57760.1 68418.m07220 expressed protein 27 9.2
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 27 9.2
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 27 9.2
At3g01175.1 68416.m00022 expressed protein 27 9.2
At1g59540.1 68414.m06694 kinesin motor protein-related similar t... 27 9.2
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/76 (25%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +1
Query: 292 NQIMDLTTTIRFSNVPNRAT-LEMVECETRR-EESIVTIGLMLEDGERRTADFNPNIALY 465
++++D+ F+++ N AT +E++E E ++ + S+ TI ++ +G + A F+P I +
Sbjct: 660 SEVIDVINE-NFNSLVNVATEIEVLESEFQKYKASVETISSVMNEGLQDFAFFSPLIHDF 718
Query: 466 DMIMKLAPNEFGSLLN 513
+ ++ + + SL+N
Sbjct: 719 TLFVRQSSEQHDSLIN 734
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 205 TPDTSML-QILEDACKKQGFQPLDYNLKFHNQIMDLTTTIRFSNVPNRATLEMVE 366
TPD S L QIL++ Q Q + N ++ NQ+M L +R N EM++
Sbjct: 362 TPDASQLSQILQNPAMSQMMQSVLSNPQYMNQLMSLNPQLRSMLDMNPQLREMMQ 416
>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 504
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -3
Query: 512 FSKEPNSLGANFIIISYNAMFGLKSAVLLSPSSNIKPIVTIDSSRLVSHSTISSVALFGT 333
FS+E G + I+ G + + + + V I + +HS SSV LF +
Sbjct: 69 FSRESKGFGPYELFIA-PLCSGTSNGTICCDRTGSRSDVCIMKGDVRTHSASSSVFLFTS 127
Query: 332 LENRIVVVKSI 300
L+N+ + K I
Sbjct: 128 LKNKTKITKKI 138
>At1g21620.1 68414.m02706 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806: Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain)
Length = 308
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +1
Query: 466 DMIMKLAPNEFGS-LLNPCILYMRQEVVGVDAL-----KLKSLRH-LGLIKGKAILRLLN 624
DM+M+LA NE+G+ L+ + ++E+V D KLK + L +GK I +LN
Sbjct: 246 DMLMRLARNEYGNFLVCKALRVTQKEMVRTDLFWGLVHKLKPFHNLLRWSRGKNIASILN 305
Query: 625 KL 630
+
Sbjct: 306 SI 307
>At5g57760.1 68418.m07220 expressed protein
Length = 78
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 535 QEVVGVDALKLKSLRHLGLIKGKAILRLLNKLED 636
+E+ +AL LKS++HL L+K + + LL KL D
Sbjct: 43 EEIEDEEALFLKSIQHLLLLKSQ--VNLLKKLAD 74
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 211 DTSMLQILEDACKKQGFQPLDYNL 282
+TS ++ + KQGF PL YNL
Sbjct: 591 ETSFIEAISKELHKQGFIPLTYNL 614
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 355 EMVECETRREESIVTIGLMLEDGERRTADFNPNIALYDMIMKLAPNE 495
EM+E TRR E+ V ++L+ G A +P + D I A ++
Sbjct: 68 EMIEYLTRRSETFVAEHIVLQGGSEIEASHDPFDIISDFIDDFATSK 114
>At3g01175.1 68416.m00022 expressed protein
Length = 401
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 271 LKVGILVFYMHPLRSVTC*CLVYNALCVFFHWVL 170
LK + YMHPL C L++ L +FF W+L
Sbjct: 21 LKSSYMKLYMHPLVLFLCQLLIW--LYLFFLWLL 52
>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
kinesin motor protein (kin2) GI:2062751 from (Ustilago
maydis)
Length = 823
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 316 TIRFSNVPNRATLEMVECETRREESIVTIGLMLEDGERRTAD 441
T+ +PNR + + C+ ++ IVT+ ++ D E TA+
Sbjct: 575 TLTVKEIPNRLSESVANCKDVYKDVIVTMKSLITDKESPTAN 616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,004
Number of Sequences: 28952
Number of extensions: 268029
Number of successful extensions: 625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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