Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b21
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31050.1 68415.m03788 plastocyanin-like domain-containing pro...    29   3.3  
At2g44990.1 68415.m05602 dioxygenase-related low similarity to c...    29   4.4  
At5g59270.1 68418.m07427 lectin protein kinase family protein co...    28   7.6  

>At2g31050.1 68415.m03788 plastocyanin-like domain-containing
           protein contains plastocyanin-like domain Pfam:PF02298
          Length = 200

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 115 SSGLVLFACAGLLFSGGAI--LGGSAAWSLFRMSYYFWTSDLGVELSSSVLF 264
           +S L+L A  G+   GG +  +G S  W++  ++Y  W S +  ++  S++F
Sbjct: 11  TSLLILVALFGISV-GGTVHKVGDSDGWTIMSVNYETWASTITFQVGDSLVF 61


>At2g44990.1 68415.m05602 dioxygenase-related low similarity to
           carotenoid cleavage dioxygenase 1 [Arabidopsis thaliana]
           GI:3096910; contains Pfam profile PF03055: Retinal
           pigment epithelial membrane protein
          Length = 618

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 179 PPKMAPPLNKSPAHANKTKPLL 114
           PPK  PPL   P H ++T P L
Sbjct: 6   PPKFLPPLKSPPIHHHQTPPPL 27


>At5g59270.1 68418.m07427 lectin protein kinase family protein
           contains Pfam domains PF00139: Legume lectins beta
           domain and PF00069: Protein kinase domain
          Length = 668

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -2

Query: 185 ADPPKMAPPLNKSPAHANKTKPLLLMLTISVTKY-FL*FLNCITY----KSYSEYLEYFS 21
           + PP   PP    P   +K    ++++ ++VT   FL  L    Y    K Y+E LE++ 
Sbjct: 270 SSPPPPPPPPPTPPTSRSKDSKNIIIICVTVTSIAFLLMLGGFLYLYKKKKYAEVLEHWE 329

Query: 20  STF 12
           + +
Sbjct: 330 NEY 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,927
Number of Sequences: 28952
Number of extensions: 330712
Number of successful extensions: 923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)