Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b13
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03970.3 68416.m00418 expressed protein 29 2.8
At3g03970.2 68416.m00417 expressed protein 29 2.8
At3g03970.1 68416.m00416 expressed protein 29 2.8
At3g17400.1 68416.m02223 F-box family protein contains Pfam prof... 28 3.7
At3g50190.1 68416.m05488 expressed protein contains Pfam profile... 28 4.9
At2g21730.1 68415.m02585 mannitol dehydrogenase, putative simila... 28 4.9
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina... 27 6.5
At1g17590.3 68414.m02169 CCAAT-binding transcription factor (CBF... 27 6.5
At1g17590.2 68414.m02168 CCAAT-binding transcription factor (CBF... 27 6.5
At1g17590.1 68414.m02167 CCAAT-binding transcription factor (CBF... 27 6.5
>At3g03970.3 68416.m00418 expressed protein
Length = 554
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 333 PKSITIVKETVSQEVHKHENCESDKEVSAHRYVYKKEVIEPYLEPDPSLD---CKTKDEL 503
PKSI+ E + QE+ K++ + +++AH + + E + E DP D CK ++ L
Sbjct: 255 PKSISSELELIYQEMEKYQKDQHYVKMAAHETMRQAERL--ICEADPMFDAENCKPRNSL 312
>At3g03970.2 68416.m00417 expressed protein
Length = 554
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 333 PKSITIVKETVSQEVHKHENCESDKEVSAHRYVYKKEVIEPYLEPDPSLD---CKTKDEL 503
PKSI+ E + QE+ K++ + +++AH + + E + E DP D CK ++ L
Sbjct: 255 PKSISSELELIYQEMEKYQKDQHYVKMAAHETMRQAERL--ICEADPMFDAENCKPRNSL 312
>At3g03970.1 68416.m00416 expressed protein
Length = 554
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 333 PKSITIVKETVSQEVHKHENCESDKEVSAHRYVYKKEVIEPYLEPDPSLD---CKTKDEL 503
PKSI+ E + QE+ K++ + +++AH + + E + E DP D CK ++ L
Sbjct: 255 PKSISSELELIYQEMEKYQKDQHYVKMAAHETMRQAERL--ICEADPMFDAENCKPRNSL 312
>At3g17400.1 68416.m02223 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 185
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = -2
Query: 276 PCPCQGPYVWSSGIDRCCWFVFLSLRLYICWWCHXXXXXXXXXXXSGYTFRYNLTCSP 103
P C VW+ + WF SLR + W+ + T R+ LTC P
Sbjct: 115 PKDCARLVVWNPYWGQTLWFKPTSLRHFPHWYMYAIGYQMRRGNRDAKTSRWLLTCRP 172
>At3g50190.1 68416.m05488 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 463
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 318 QDPYCPKSITIVKETVSQEVHK---HENCESDKEVSAHRYVYKKEVIEPYLEPDPSL 479
Q P P + K SQE + H + DKE V+++ V++P L+P+P L
Sbjct: 234 QLPLMPTYMPSTKIENSQENNNKFFHPIADKDKEELHCLDVFRRSVLQPSLKPEPRL 290
>At2g21730.1 68415.m02585 mannitol dehydrogenase, putative similar
to ELI3-2 (SP|Q02972), sinapyl alcohol dehydrogenase
(Populus tremuloides) (gi:14279694); contains Pfam
zinc-binding dehydrogenase domain PF00107
Length = 376
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 300 EICHVEQDPYCPKSITIVKETVSQEVHKHENCESDKEVSAHRYV 431
E C+ + + YCPK + S +++ SD V HR+V
Sbjct: 101 ESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFV 144
>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 956
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 399 SDKEVSAHRYVYKKEVIEPYLEPDPSLDCKTKDELVAAALH 521
S++E+S R + E+ YLE D +DE + LH
Sbjct: 355 SEREISVVRALMMSEIESAYLERDQVQSTSLRDEYIQHFLH 395
>At1g17590.3 68414.m02169 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 328
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 150 TKNLSFEDCDTTSIYKAVEKGTQTSSTG 233
TKN+SF+D D++S + + +S+G
Sbjct: 53 TKNISFQDQDSSSTLSSAQSSNDVTSSG 80
>At1g17590.2 68414.m02168 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 328
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 150 TKNLSFEDCDTTSIYKAVEKGTQTSSTG 233
TKN+SF+D D++S + + +S+G
Sbjct: 53 TKNISFQDQDSSSTLSSAQSSNDVTSSG 80
>At1g17590.1 68414.m02167 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 328
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 150 TKNLSFEDCDTTSIYKAVEKGTQTSSTG 233
TKN+SF+D D++S + + +S+G
Sbjct: 53 TKNISFQDQDSSSTLSSAQSSNDVTSSG 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,468,415
Number of Sequences: 28952
Number of extensions: 205583
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -