Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a06
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic...    32   0.36 
At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identic...    31   1.1  
At2g41850.1 68415.m05172 endo-polygalacturonase, putative simila...    30   1.9  
At1g69790.1 68414.m08030 protein kinase, putative similar to pro...    30   1.9  
At5g43755.1 68418.m05351 expressed protein ; expression supporte...    29   2.5  
At3g48380.2 68416.m05281 expressed protein                             29   4.4  
At3g48380.1 68416.m05280 expressed protein                             29   4.4  
At3g59800.1 68416.m06673 expressed protein                             28   7.7  
At2g28930.1 68415.m03515 protein kinase (APK1b) identical to pro...    28   7.7  

>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 486

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 319 KKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEF 495
           K+ + K+  PF   K ++  T+ E F+++       P +T VN      SN+ QK EEF
Sbjct: 182 KEQNMKEEYPFSPPKVKVEDTQKESFVDR-SFGGKKPVSTSVNNSLVELSNYNQKREEF 239


>At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 487

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 319 KKAHS--KKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEE 492
           KKA    K+  PF   K ++  T+ E F+++       P +T VN      SN+ QK EE
Sbjct: 181 KKAEQNMKEEYPFSPPKVKVEDTQKESFVDR-SFGGKKPVSTSVNNSLVELSNYNQKREE 239

Query: 493 F 495
           F
Sbjct: 240 F 240


>At2g41850.1 68415.m05172 endo-polygalacturonase, putative similar
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 433

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 341 LFLLWAFLQISWCLAMR 291
           +FLLWA L  SWC A R
Sbjct: 10  VFLLWALLMFSWCKASR 26


>At1g69790.1 68414.m08030 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           SWISS-PROT:Q06548
          Length = 387

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 468 QLATKTRRVHPGNTSGETSAG-TFECWR*AERSAAPSAVGESGLRAVSSLQSQ 623
           +L T TR   P +  GE   G  ++ W   ERS +PS  G   + AV  L+S+
Sbjct: 76  ELKTATRNFKPNSMIGEGGFGCVYKGWI-GERSLSPSKPGSGMVVAVKKLKSE 127


>At5g43755.1 68418.m05351 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 331 SKKRKPFDVLKHRLAGTEAEPFI-NKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFIQ 501
           S +  P + +K   A  EAE +I N L     TPSTT     +Q  S W++ H  +I+
Sbjct: 3   SFEHSPSESIKSPDATNEAEEWITNGLCAQVPTPSTTN-GTTRQFQSQWQKPHMGWIK 59


>At3g48380.2 68416.m05281 expressed protein
          Length = 640

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +1

Query: 499 QAIRAAKQVQAHLNAGGKLSD 561
           +A+RAA++++ HL+ GG+L D
Sbjct: 88  EAVRAARRLRKHLSEGGELDD 108


>At3g48380.1 68416.m05280 expressed protein
          Length = 645

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +1

Query: 499 QAIRAAKQVQAHLNAGGKLSD 561
           +A+RAA++++ HL+ GG+L D
Sbjct: 88  EAVRAARRLRKHLSEGGELDD 108


>At3g59800.1 68416.m06673 expressed protein 
          Length = 186

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 271 GRHFASDRIAKHQE--ICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKV 444
           GR+++SD+  K ++    KK  SKKRK +   +   +  E E    + R ++      K 
Sbjct: 98  GRNYSSDKSRKDKKDRDSKKKKSKKRKHYSSSESSSSSDEDES--RRSRSSSKRSKKEKK 155

Query: 445 NKGKQLNSNWRQKHE 489
           +K  +   + + KHE
Sbjct: 156 HKSSRDKHSSKSKHE 170


>At2g28930.1 68415.m03515 protein kinase (APK1b) identical to
           protein kinase APK1B [Arabidopsis thaliana]
           SWISS-PROT:P46573
          Length = 423

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 322 KAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFIQ 501
           KA ++  +P  VL     G+  + +I++   T + P T  V   K+LN +  Q H+E++ 
Sbjct: 74  KAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLA 133

Query: 502 AI 507
            +
Sbjct: 134 EV 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,645
Number of Sequences: 28952
Number of extensions: 264712
Number of successful extensions: 918
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)