Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b09
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    28   3.1  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    28   3.1  
At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containi...    27   5.4  
At1g69450.1 68414.m07980 early-responsive to dehydration protein...    27   7.1  
At1g51090.1 68414.m05744 heavy-metal-associated domain-containin...    27   7.1  
At3g01100.1 68416.m00015 early-responsive to dehydration protein...    26   9.4  

>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 415 QNQPNPHLRALVHP 374
           Q+QP PHL+AL HP
Sbjct: 64  QSQPQPHLQALPHP 77


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 415 QNQPNPHLRALVHP 374
           Q+QP PHL+AL HP
Sbjct: 64  QSQPQPHLQALPHP 77


>At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 780

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 101 RIRKVVTIRGVGPRQAVLYQNNHIAALHRIGRQDRVLSL 217
           ++  V+ ++G+ P  +V Y N  I  LHR+GR++    L
Sbjct: 538 KLLNVLQLKGLSP-DSVTY-NTLINGLHRVGREEEAFKL 574


>At1g69450.1 68414.m07980 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 646

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 405 QILTFGLLFILHFFIARCFFGFIISIF 325
           ++L FGLL I +FF+A     FI+  F
Sbjct: 476 RVLFFGLLGITYFFLAPLILPFILLYF 502


>At1g51090.1 68414.m05744 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 171

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 120 LFGEWVRGRQCCIKTITSQRC 182
           ++  W  GRQCC + + SQ C
Sbjct: 148 VYESWGGGRQCCHEDMNSQGC 168


>At3g01100.1 68416.m00015 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 703

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 411 INQILTFGLLFILHFFIARCFFGFIISIFTCI 316
           I +IL FGLL I +FF++     F++ ++ C+
Sbjct: 545 IPRILFFGLLGITYFFLSPLILPFLL-VYYCL 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,902,474
Number of Sequences: 28952
Number of extensions: 124909
Number of successful extensions: 268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)