Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0115
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17700.1 68414.m02191 prenylated rab acceptor (PRA1) family p...    30   1.8  
At5g60310.1 68418.m07559 lectin protein kinase, putative similar...    27   9.3  

>At1g17700.1 68414.m02191 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 180

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 513 SYRNIILFKLFLTCFWSPFTSLVKCLLV 430
           +Y  ++LF +FL+  W+PF+ LV   L+
Sbjct: 71  NYTIVVLFSVFLSLIWNPFSLLVLLALL 98


>At5g60310.1 68418.m07559 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 616

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 559 WI-YEQSLLN*IIASCIVSKYYSV*IIPHLFLVTVYESRKMFISF 428
           W+ YE ++LN  +A   V K     +  H+ L  +Y +R++F+ F
Sbjct: 195 WVDYEDNMLNVSMAPREVQKPSRPLLSQHINLSDIYPNRRLFVGF 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,218
Number of Sequences: 28952
Number of extensions: 253844
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)