Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0108
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54600.1 68416.m06041 DJ-1 family protein low similarity to S...    30   1.9  
At1g65910.1 68414.m07479 no apical meristem (NAM) family protein...    29   4.3  
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi...    28   7.6  
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ...    27   10.0 
At3g49310.1 68416.m05391 expressed protein contains PF05631: Pro...    27   10.0 
At1g52950.1 68414.m05988 replication protein-related low similar...    27   10.0 

>At3g54600.1 68416.m06041 DJ-1 family protein low similarity to
           SP|Q51732 protease I from Pyrococcus furiosus; contains
           Pfam profile: PF01965 DJ-1/PfpI family
          Length = 399

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 439 NCRMIHLIRQFALLGSFILAVFARLWWLAAVGA 341
           N + + L+R+F   G F+ A+    W LAA GA
Sbjct: 306 NPKAVELVRKFVEKGKFVAAIGMGNWLLAATGA 338


>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
           similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
           esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
           thaliana}
          Length = 631

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = +1

Query: 415 GLNESFDNS----SPQLVGMTQLGHLSNAHSNSDHIKSTKSSFNSKITTLSTFSILIYGN 582
           G+ E+ +NS    SP+  G+TQLG  +N+ S+ + I++  S F S  T+ +      YG 
Sbjct: 192 GMYENLENSGYPVSPETGGLTQLG--NNSSSDMETIENKWSQFMSHDTSFNFPPQSQYGT 249

Query: 583 I 585
           I
Sbjct: 250 I 250


>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 852

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +1

Query: 439 SSPQLVGMTQLGHLSNAHSNSDHIKSTKSSFNSKITTLSTFSILI 573
           SSP ++     G L N +SNS +I+++K  F  K TT +T++IL+
Sbjct: 491 SSPNILKNNGPGSLVNRNSNSPYIQASK-RFCFKPTT-ATYNILL 533


>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
           Cytochrome P450 91A1 (SP:Q9FG65)  [Arabidopsis
           thaliana]; similar to cytochrome P450, Helianthus
           tuberosus, EMBL:HTCYP81L
          Length = 500

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 231 RIVALSAEFELSEASRRLSLMKLSRFADGLD*RTQRRFLDGMPVRYAS 88
           RIV L  +F L  A   L L+   R     D  +++RFLD   +R+ S
Sbjct: 168 RIVDLKYQFTLLTAHIMLRLVSGKRGVKKSDPESEKRFLDDFKLRFFS 215


>At3g49310.1 68416.m05391 expressed protein contains PF05631:
           Protein of unknown function (DUF791)
          Length = 460

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 478 LSNAHSNSDHIKSTKSSFNS-KITTLSTFSILIYGNIYCLLGPNVVRIY 621
           L  + +N D I +T SSFNS K   L  FSI++ G+   L GP V  +Y
Sbjct: 19  LELSKTNKDRI-NTSSSFNSFKNNYLLVFSIMMAGD--WLQGPYVYYLY 64


>At1g52950.1 68414.m05988 replication protein-related low similarity
           to replication protein A1 GI:2258469 from (Oryza sativa)
          Length = 566

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 25/84 (29%), Positives = 34/84 (40%)
 Frame = +1

Query: 325 IPERRPLRQPPATRVERRQQG*MIRGERIVGLNESFDNSSPQLVGMTQLGHLSNAHSNSD 504
           I E +P  QP   R ER +Q      + I  L  SF+    +++       L  +     
Sbjct: 250 IMEPKPRFQPLRVREERSKQ---FERKTIAELKASFEVEKVKIICSILSIDLDYSWYYYA 306

Query: 505 HIKSTKSSFNSKITTLSTFSILIY 576
           HIK  K  F SK T  S    +IY
Sbjct: 307 HIKCNKKVFKSKKTLSSGAKKIIY 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,011
Number of Sequences: 28952
Number of extensions: 255367
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)