Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0024
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containi... 31 0.63
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 29 2.5
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 28 4.4
At4g31600.1 68417.m04489 UDP-glucuronic acid/UDP-N-acetylgalacto... 28 4.4
At4g30150.1 68417.m04287 expressed protein 28 5.8
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein... 28 5.8
At3g14820.1 68416.m01872 GDSL-motif lipase/hydrolase family prot... 28 5.8
At5g65230.1 68418.m08206 myb family transcription factor (MYB53)... 27 7.7
At2g04600.1 68415.m00468 hypothetical protein 27 7.7
>At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 754
Score = 31.1 bits (67), Expect = 0.63
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 35 ETGSMLESTSHATVRHSI-KFDYVDELIQMLKDPLNY-GLFLDDYSANILLNELLVKKNY 208
E G + S + H K V++ + +++ N G F D Y+ N L+N L +
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311
Query: 209 TQAADIAALIMLQEEYNNDI 268
A +I +MLQE Y+ D+
Sbjct: 312 KHAIEIMD-VMLQEGYDPDV 330
>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein
Length = 911
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 518 LIYKKYDQLLATSEELCTNTKFRIYNEVIDLLNKEL 625
L+Y D+ TS ELC + + RI ++ I +L+ E+
Sbjct: 549 LMYSDGDKAFGTSSELCIDERLRISSDGIIVLSMEI 584
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 146 LFLDDYSANILLN-ELLVKKNYTQAADIAALIMLQEEYNNDILCSLCQYSSYMFI 307
+FLDD + + E K+ Q D+ + + Q E ND+ CS+C Y + +
Sbjct: 656 IFLDDGRSLLECQVEAYKKRKKAQPPDMLKMKLRQGE--NDVFCSVCHYGGKLIL 708
>At4g31600.1 68417.m04489 UDP-glucuronic
acid/UDP-N-acetylgalactosamine transporter-related
contains weak similarity to UDP-glucuronic
acid/UDP-N-acetylgalactosamine transporter (UDP-
GlcA/UDP-GalNAc transporter) (Swiss-Prot:Q9NTN3) [Homo
sapiens]
Length = 323
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 188 IHSVICLHYNHPRTVHNLKDLLTSVLIH 105
I+ + + Y H TV L+ L TS+LIH
Sbjct: 31 INKAVIMQYPHSMTVLTLQQLATSLLIH 58
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 452 TLAWISEKTSNTLNNNLQLIGWLIYKKYDQLLATSEELCTNTKFRIYNEVIDLL 613
T+ +S S L + LI ++ LAT + C F +Y+ V+D L
Sbjct: 192 TILGVSLNLSRNLLKAIGLITGRFLSALNESLATGVDFCNGQGFVVYSSVVDCL 245
>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 604
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 188 IHSVICLHYNHPRTV-H-NLKDLLTSVLIH 105
+ V C H N T H NLKDL+TS+ IH
Sbjct: 571 LFDVFCKHGNDEFTYPHGNLKDLITSIFIH 600
>At3g14820.1 68416.m01872 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL3 GI:15054386 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 311
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 20 LRLSAETGSMLESTSHATVRHSIKFDYVDELIQMLKDPLNYGLFLDD 160
L +++ S L++ I D D L+ ++K+P NYG + D
Sbjct: 206 LHFNSKLSSSLDTLKKELPSRLIFIDVYDTLLDIIKNPTNYGFKVAD 252
>At5g65230.1 68418.m08206 myb family transcription factor (MYB53)
contains PFAM profile: myb DNA binding domain PF00249
Length = 310
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 107 ELIQMLKDPLNYGLFLDDYSANILLNELLVKKN-YTQAADIAALIMLQEEYNNDILCSLC 283
+L Q L P + +++ + NIL LL+K+N T D+ L +++NN+ L SL
Sbjct: 174 QLFQYLLQPSPAPMSINNINPNIL--NLLIKENSVTSNIDLGFLSSHLQDFNNNNLPSLK 231
Query: 284 QYSSYMFIKN 313
F +N
Sbjct: 232 TLDDNHFSQN 241
>At2g04600.1 68415.m00468 hypothetical protein
Length = 316
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 182 NELLVKKNYTQAADIAALIMLQE-EYNNDILCSLCQYSSYM 301
NELL KK Y + + +L+++ + + ++C+L SS++
Sbjct: 35 NELLAKKEYRKDVILTSLVLIHDHQMGMCLICTLFPLSSFV 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,669,256
Number of Sequences: 28952
Number of extensions: 182259
Number of successful extensions: 449
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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