Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060157.seq
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At1g61030.1 68414.m06871 expressed protein                             29   3.8  
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1...    28   6.6  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   8.7  
At3g19300.1 68416.m02448 protein kinase family protein contains ...    27   8.7  
At3g02510.1 68416.m00239 regulator of chromosome condensation (R...    27   8.7  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   8.7  

>At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 727

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 415 AHRTPLEAHQNGAETTRGQPAPPAHHT 495
           AHRTP +  +   ET    P+PP+H T
Sbjct: 56  AHRTPFDLRKWDPETHLPPPSPPSHST 82


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 134 KSVTIFKRNEENRSLALRTTP--GGEMSVMQKRQHCYL 241
           KS+++ KRN+    +   TTP  G + SVM    HC L
Sbjct: 440 KSLSVSKRNQSAFLVGCSTTPKPGSQSSVMSTIDHCTL 477


>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 968

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 443 KMEQKQQEDNLHLQLTIHRRLVYVTPSTT 529
           K++Q +++  LHL+  +H+R+V   P+ T
Sbjct: 630 KLQQSERDKLLHLEEELHKRVVGQNPAVT 658


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 241 EVAVLPFLHHRHLAAGCSAECERSVFFV 158
           EV V PFL    +A+   AECE++ F V
Sbjct: 895 EVLVPPFLTSESMASAEMAECEKASFLV 922


>At3g19300.1 68416.m02448 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 663

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 241 EVAVLPFLHHRHLAA---GCSAECERSVFFVSLEN 146
           E+ +L  LHHRHL A    C+ + ER + +  +EN
Sbjct: 370 EIELLARLHHRHLVALKGFCNKKNERFLVYEYMEN 404


>At3g02510.1 68416.m00239 regulator of chromosome condensation
           (RCC1) family protein similar to UVB-resistance protein
           UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
           profile PF00415: Regulator of chromosome condensation
           (RCC1)
          Length = 393

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 387 RSWSVACKRSTPYALRSPSKWSRNNKRTTCTSSSPYTDGW 506
           + W+   +   PY++RS    SRN+    C   + +T GW
Sbjct: 26  KEWACVVEALEPYSVRSVVSGSRNS-LAICDDGTMFTWGW 64


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 191  TPGGEMSVMQKRQHCYLCDLPPCRGQCCMSFQKQCVEG 304
            T  G   + Q    CY CDL   +G CC    K C  G
Sbjct: 1578 TSSGSNFMEQHWYFCYTCDLTVSKG-CCSVCAKVCHRG 1614


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,914,823
Number of Sequences: 28952
Number of extensions: 278180
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)