Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060150.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containi...    31   0.93 
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    27   8.6  

>At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 871

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 213 RKRDQLRRSGEKLSGLCLWVNSLGKP--FVASDGFDEDGDRIFGYFRAVASAMITGRYV* 40
           R R ++ + G + +  C W+   G+   FVA D  + + + I  + R V + MI   Y  
Sbjct: 723 RLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSP 782

Query: 39  IVKY 28
           + KY
Sbjct: 783 LTKY 786


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 500 TSPILTRGVEEGRSLLDGVSGPLVATNSLAHELSQMSRRPVAESFKRTT 646
           T P+LTR  E  R +L+   G  +  ++    +++  R+P +E  +  T
Sbjct: 728 TRPVLTRRQERDREMLEAWGGLGLGDSTSYQPVNKNKRKPESEKMETAT 776


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,749,801
Number of Sequences: 28952
Number of extensions: 236182
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)