Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060142.seq
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family...    33   0.23 
At1g11720.1 68414.m01345 starch synthase, putative strong simila...    30   1.6  

>At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; Common family members At5g09530,
           At5g09520, At1g44222 [Arabidopsis thaliana]
          Length = 144

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +2

Query: 260 WFPEH*DAGKNGRRGETEDRRPTSFVXVRKVSPKKP 367
           WFP     G NG   +TE  +PTS V    VS KKP
Sbjct: 109 WFPSFPIPGVNGGLPKTEKTKPTSTVEEVNVSNKKP 144


>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 276 EMQEKMAEEEKRRIEDQRALLX*ERSRRKSQAXXR 380
           E + +  +EEKRRIE Q+A +  +R++ K++   R
Sbjct: 248 EAERERQKEEKRRIEAQKAAIEADRAQAKAETQKR 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,247,753
Number of Sequences: 28952
Number of extensions: 188817
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)